HsaINT0170336 @ hg38
Intron Retention
Gene
ENSG00000120332 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr1:175093990-175097683:+
Coord C1 exon
chr1:175093990-175094253
Coord A exon
chr1:175094254-175097416
Coord C2 exon
chr1:175097417-175097683
Length
3163 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CTTTCATCTCTCTCTTAAAGAAA
3' ss Score
8.68
Exon sequences
Seq C1 exon
AAATTGACAGTCCAACCAATGTTGTCACTGATCGAGTGACTGAAGACACAGCAACTGTCTCCTGGGACCCAGTGCAGGCTGTCATAGACAAGTATGTAGTGCGCTACACTTCTGCTGATGGGGACACCAAGGAAATGGCAGTGCACAAGGATGAGAGCAGCACTGTCCTGACGGGCCTGAAGCCAGGAGAGGCATACAAGGTCTACGTGTGGGCTGAAAGGGGCAACCAGGGGAGCAAGAAAGCTGACACCAATGCCCTCACAG
Seq A exon
GTAACAGAAGGACGGGAGCATAAATAGGTTTCCTCATGGCAGGGAGAAGGTTGATTTTTGAATCAGGAGGTCATTGCTCACCTGGCATCAGCTCTTTTGTTTGCAGGAGTGGGGAGGAGGTTGCAAAACCAATTTTGATTTTCATAATTATATATATTTTTCCTTTTTAACATCAAACAAAAGAGATCAGCTTTTTCACTTGATGCAGAAGGTCATACTTATTTGAGTTGGAATTCCGTATGCAACCCCCTCAGAATAGAGTAACACTTCCTAATTTTCATTTTTTAGATGTGAAAACTCAAAACATTGGGCTGACAGTGAATTTGAATGCTTATCTCAGTTTGCAGTGGCTGTGCAGGCACTTTGCATATAATCTGGAGCTCTCTTTTAGACCGTGGAAATAGTTTGCATCCTAAGTCAACATTTACTAAATGGACCAATTCTTCCTTTAAGCTTTCAGAAGCCATGAGGGTTCTCATACTTCACCCAGTCATTCTGCTCAGTTTGCGCCTGCAGGGGTCCTGGGACTATACTGGGACATAGCCCAGCCATTCTTTCTGCTTAAATCCTCTCCTGGTGCTTCTCTGAATTTAGAGCAGCCTGATCCTGGTGCCCGCATGAGGTTCCAAAACACCTGGCAGGAAATCAGAGGGAAAGGCTTCGCTTATTGTTTGCATTCTATTCTGGACAGTTACTGAGTATAGAGACTCTCAGAGAAGCAGAGAGATGGTTAGGAATATGGTTTCAGAAAATTGACTGTCCAGGTTTTAACCCCAGCTCTGCCATTGACTAGCTGAGTGGCTTTGAGCAAGTTACTTTACTTCCGTTCCTGTTTCTTATGGCACAAGTGAGAGCAATGATTTTTTAGAATGTTAATCAGTATTTGGCTCTTGAAAGATTTCGTGGTGCACAGCCTCCTAGATCCATGTGGGCCTCAATAGTTGACCTCTTCTTCAGGGGAGCAGAGAAGACATTGACAGTAAGGATGGTGATATCTAAATCTGTTTAAAGTCAAAGTCAGCAAATTTCTGTAAAGGACCAGATAGTAAATATTTTTGGCTTTGGGGGTCCAACAGTTTCTATTGCAATTACTTAACTCTGCCATTGGAGCATGAAAACAGCCACAGACAATGATGTGTAAATGGACTGGTGTGACTGTGTTCCGATAAGACTTTATTGATAAAGATTGACAGTGGATCAGATTTGGCCTGTGGGTTGTAGATTGCCCCTCCTGGTTTACATTACACGTGACTCTCTGTTTACTAGGATTTTGAGTGTCGTGAAAAGAAAGAGCATTTGGGTCAGCATTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTGAGACAGAGTCTCGCTCTCTTGCCCAGGCTGGAGTGCAATGGCGCAATCTGGGCTCACTGCAACCTCCATCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTTCAGGCACCCGCCACCACGCCCAGCTAATTTTTGTATTTTTAATAGAGACGGGTTTTCACTGTGTTCCCCAGGCTGGTCTCGAACTCCTGAGCTCAAGCAATCCACCCTCCTCGGCCTCCCAAAGTGCTGGGAAATACAGGCGTGAGCCACCACGCCCGGCCCATTTTTAAAACAAAGGAAGTTGGAATAGAGAAGAACCTTCCCTTTTCTTAGGCGGTGGTGGTGTGAGCAGCAGGGAGCCTCTGGAGGGTGGCATTGCCACTGGGAAGGGGTCAGACCAGAGCTGAGCTCTGGGGGCACAAACATGAAGGAAGTGATTCACGCCTGTATGGCATTCACAATCCTCTGGGTAGAGAAGACAAGTTAAAAAGATAAAGGACAGTGAGTTATGTTCTAGAGCAAACAAATGTCCCTGGAGCTATGGGAAACTGAAGAAAGGGGACCTACCACAGACTAGGACAGGATAGGGGTCATGCAGGCTGTGGGAGGAGGTGACACCTGAACAAAGCCTGGAAGGACGGGTGGGAGTTAGCAGTGGAGGCAGCATATGCAGAGGCTAAGTTGTGAGAATATGACAGGTTAGGTCATCTCAAGGGGTTTTAATGGAGGGCCGGTCTGTGTGTTTGGTGCACTAGTGAAGGATAAGCCAGCTCAGAATCCTGGGTGCTAAATCATTTGTCCTCATGTCAGATGTCTGTGGTGCATGCTGAACTTTGCTCCCTAGGGTGAGTCACTGCATGTGGCTGTGCATTCCACCATGCTGGCCTGTCCCCCTTGGCAAGTGGTCCTGTGCAGGTATGAAATGCAGGTGCTGTCACAAAAAGTACAGCCTTTTTTGAGGAGGTAGTTTCTAAAAGAGGATAATAAAGTCATGCTAACCATACACACAATTGCTTGGATTTTTGACTCCCTAAGGATGTACATTTTGAGGAGAAAGTGGTATTTCATGCCTCAAATGCCATTAATAATAACAACTTATATTTAAGCATTTGCTATGCAATATCTCATTTACTATCACCATAACCTATGAGGTAGGTAGTGGTATTTCTTTCTTCATAGAGTTGAGGAGACAGACACTTAAATTACACGGCTTGTCCAAAGTTAGCCACCAGGAAGAGATGGAGCCCAGGTTCTAACCCACTTTAATCACAGAGAAACCCAGACAGATTCTACAAGTTTGATTCTTTTTATTAGACCAGACCTCAGATACTATCAATTAAAAAGTCTCCTGGTTCCCTGGCCACAGATGTAATGTTTTATATGGAAAGAACTGATGGCTACTACTTCTAGGATATTTTTCTTCTCAAAGAACATATTAGAGCAGATGCAGAGGTTTATTCAGTATAATTGCTTTCTAGTACAAGGAGTCAGGAACTAGAAGAATATGTTATATAAATCCAGGGTAAAGGAGAAATTTGAATGTGAAGACCAATTATTTTTATCCCAAAGCGACTTCCGGGAAAAGTTTATAGAGTTGATAAAGATGCTGGCTTTGTCTGAAAACTCCACTTCTTATTAAATGTTATTAGCTTATTACTGGAATTTCAGACCATTTGCTTAATTAGACCTTTACATTAACTCAATCATTGACATATTAGAGACTCTGACATTTGTTGAGGTTATCACTTTGACTGTGTTCGTGCTGTCTTTATGGAATTAGAGGGTGGTAAAGGCTACATTCTTCTTTCATCTCTCTCTTAAAG
Seq C2 exon
AAATTGACAGCCCAGCAAACCTGGTGACTGACCGGGTGACTGAGAATACCGCCACCATCTCCTGGGACCCGGTACAGGCCACCATTGACAAGTACGTGGTGCGCTACACCTCTGCTGACGACCAAGAGACCAGAGAGGTTCTGGTGGGGAAGGAGCAGAGCAGCACTGTCCTGACAGGCCTGAGGCCAGGTGTGGAGTACACAGTGCATGTCTGGGCCCAGAAGGGGGACCGAGAGAGCAAGAAGGCTGACACCAACGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120332:ENST00000239462:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.520
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=PU(28.8=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains