RnoINT0153921 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77869300-77872792:-
Coord C1 exon
chr13:77872529-77872792
Coord A exon
chr13:77869564-77872528
Coord C2 exon
chr13:77869300-77869563
Length
2965 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTTTTGAATCTTCCTTAAAGAAA
3' ss Score
5.34
Exon sequences
Seq C1 exon
AAATTGATGGACCAACCAATGTGGTCACAAACCAAGTGACAGAAGACACAGCATCTGTTTCCTGGGATCCAGTGAGGGCTGACATAGACAAGTATGTGGTGCGCTATATCTCCCATGATGGGGAGACCAAGGAGAAGGCAGTACCCAAGGACCAGAGCAGCACCGTTCTCACGGGCCTGAAGCCAGGAGAGGCCTACAAAGTCTTTGTGTGGGCTGAGAGAGGCAACCAAGGCAGCAAGAAAGCAGACACCAAGGCCCTCACAG
Seq A exon
GTAAAGGGAGAATGGGAGTTACGTAGGTTTCCTCAGGGTAAGGAGGAAGTTGCTTTTGGAGGTGAAGATCATTGCCACTTGGCATCATCTCTTTTACTGGTGGGGTTGGAGAATATTTACAAAAGTGGTTTTAAAAGATCTTTATTATTCTTTATTTTTTATACAATATATTTTGATTTTATTTGATTATATTTTCCGCTTTCCCAGTTGCTCTCAGGTCCATACCACCTCACTTCCCCACGCACCCAGCTTCAGGCTCTCTCTCTCTCCAAAACGCCTCCACAGAAATAATAAAATAAAACAAAAACTCCAAAGCATCAAAAATCAAAACAAACTAAAAATTATAATACAACGTTCACAAAAGCCGTGGAGTGAGTTTGTGTCGGCTTCTGTTCCTGGGCATAGGGGCTGCTTGGAGTACGGCTGTCAGACTCAGAGACACTCCGCGGGGAAATGGATTTCCATTTCCCTCAGGTGTGCATGGCTGTTAGCTCCCTGGTTAGGGGTGGGACTTCGCATCTACTTTCCCTGCTCAATGCTGAGATTTTTTTTTGTCCCAAAGCAAATTTCAAAGGTCACATTTGTGATTTTTTTCCATTTTAACCTCAGACTGAGCTATAAGACTATTTAATAGAAATAGTCATATTTACTTGGGATGGAATTCCATATACATCTGTCTTGGAGTAGAGTAAAATGTAATTTTTACTTTTTAATGAAAACTGAAATTATTGGGCCAACTATGAATTTGAATGTTTATCTCAGAGTGATAGAAGTAGTTTGCACGCATGCAGACAGGAGTTCTCTTTCAGGCCATCCACATGCTTTGCATCCCACACCAACATTTGCCAATCACACCAATTCACAAGGATCTCCGACTGCATCTGCGTGTTCTGCTCAGCTCAGGCCTTCAGATGTTCTGAGACAAACTGGGACAGAGCATGGCCAATCTTTGCGTTTAAACACTCTTTTGGTGGTCGCCGAATTCACAACAGTCTAATTGGTATCCACCTGCTCTTCCAAAGCTCTTAACAGGAACTCAGAGGGAAAAGGACCCGCTGATTGTGTTTGTACTGTCACTGAATACAGAGAACTTCAGAGAAGCATGCATAGAATTACGTATTAGGAATACGGTTTCAGATCCTTGACTGTTCAACATTGAACCCCAGTGTTAGCATCTATTCTCTGAGTGGCGGTGGGTCAATTTCTGGTTTATAAAATGGCTCAGGAGTGTCTGTGCTATAGGAAGATGGGAAGGGTTATGTAAGTGTCCTAGCTAGGGTTACTATTGCTGTGATAAAACTCCATGATCAAAATCAAGTTGGGGCAGAGAAGCTTTATTCAGTTTACACTTCCACATCACAGTCATCCTCAAAGCATGGCAGAACAGGAGCTCAAGCAGGGCAGGATCCTGGATGCAGGAGCTGATACAGTGGCCACAGAGAAGTGCTGCTCACTGGCTTGCTCCTCATGGTTTGCTCAGCCTGCTTTCTTACAGACGCCAGAACCAGCAGCCCAGGGTAGCACCACCCACAAGGATCTGGGCCCTTTCCCATCCATAACTCAGAAATGCCCTACAGGCTTGCCTACAGCTCAGTCTTATGTAGGCATTTCCTTAATTAATGCTCCCTCCTCTCAGAAGACTTTCGCTTATATCAAGTTGACATGAAACTGTGCAGCCCAGTGAGCTAATTCATATAAAGCAGCTGACACACATCACATCAAGTGTCCCCGTTTGCTTTCTGTTGCTGTGATGAAACACTGACCAAAACCAATTCGGGGAGGAAACTGTTTGAGAAGGTGACTCCCCCGCCCCCAAAGAAAGCCTGAAAAGACAGGTGGGAGCTAACGGGGAAGTCATATTGCAAAGGCTTCAGGTATAAGGTTGAGCAGTTGGTAATCTCAAGTGTCCTTTATGGTAGGCATGTCCGTGAGGTGGTAAAATAGCAAAGGATGGGGTTGGGACATTAAAGTGTCCCAGGACTTAGACCCTTTACCATTCCGTGACAGACAACAGTGATATAGTCCCATCTTTGTGCTTCTTAAGGTCACTTGTGTCACAGGACTACTTGTTTTACTGACGTCACTGCTAGGCCTGGCCGGCTGTGGTGTGCAGGCTGAAATGCTTTCTCCCTGGGACCACTCTTCAGGAGCTGGCTCCTGGAGCAGGGTGATGCAGGCATCCTGTTTAGGAATGCCTTTTCGTTTGTACCACATTGCTTGGAGTTTTGACTCTAAAGCCTTACAGTTTGAGGAAGAAGGGATATCCCATACCTTTTATGCCATTCTTAATAGCAAGCCTTACAAGCTCATACCATGCAGTGGTTCATCTATGAGGAACGACGGCTCCTTCCTTCTTTGCAGAGACAGAAACTTAAGTTATGCAGTTTGTCCTAAGTGAGGAACCAAGAAATCCGGGGCCCCAGCTCTAGCCTGTTTCACCACACAGATACTTGGTCGGATTCTTCTAGGATCCTTCTCATGAGCCCACACCTAAGTACCACCAGTTTAAAGCTCACCCCATTCCCTGGACACACATGTAAGTCTCTGTAGAAAGCACTGACAGCTACTACTTCTAGAACAGTTTTCATCCCAAAGAAAATTGCAGAGCAGTCGATAGGGGATTATTGAAATATACTTTCAGGTACACAGGGTTAGGGAACTGCAAGAGAGTGCTATGTAATTAATGGTAAATTACATACAAATGGTATATGAAGGCCATTTCTTTAAAGAAAGAAAAGTTTATAGAATTGATCTATGTATCGGTACGGTCTGAACTCTACCAGCCATACTAGCAGTTTGTTCTTAGAATACCTGGCATGTGTCTACTTAAGGCCTTAAGATCGCTCAATCCCCAGCATATAGCTGGCTGTGGAGTTAACTGACACCATTATTCTGCTGTGACTTTGGCCTTTTAGGAACTAGAGAATAACAAAGCTTATTCTCTGCTTTTGAATCTTCCTTAAAG
Seq C2 exon
AAATTGACAGCCCAGAAAACCTGGTGACCGACCGTGTGACAGAGAACAGTCTCTCTGTCTCGTGGGACCCGGTGGAGGCTGAAATAGACAGGTACGTGGTGAGCTACACTTCCGTGGATGGAGAGACAAAGCAGGTTCCAGTGAGGAAGGACCAAAGCAGCACCGTCCTCACCGGCCTGAGTCCAGGTGTGGAGTACAAAGTGTACGTGTGGGCAGAGAAAGGTGATCGAGAGAGCAAGAAGGCCAACACCAAGGCTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=NA C2=0.483
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]