MmuINT0163785 @ mm10
Intron Retention
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:164054701-164058813:-
Coord C1 exon
chr2:164058666-164058813
Coord A exon
chr2:164054828-164058665
Coord C2 exon
chr2:164054701-164054827
Length
3838 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CGATGGCCTTTCTGCATCAGAGC
3' ss Score
4.89
Exon sequences
Seq C1 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAG
Seq A exon
GTATCTTCTTTCTGCACAGCCACTGGTTTTGGGGACTTGAGAGCATTTGACTCCCTGAAGGTTGGGATGTAGCTCAGTGGGAGAACACTTGCCCACCCTGGGCCCTGGGGGTCGGGCTGTAGCTCAGTGTACTTCCTTGCCTGAACAGACTCCTGACTGTCGAGGGGTTCGGGTCCTACTGTGTGCATTCCCACCCACCCCAAGACTGCAAACAAGGTTTTAAAGGGGTGGAGACTTAAAGAGATGCTAAAAGAAAGTCTTTCATTGTCCTAGATTTTATCCCAAAAGGTTAAGCTTACAGTGTCAACACAAACTTTCTCCCCTGCTGTCCGTCCTGTGGCTGCTTTAACTCACCTGTTTCTGACAGTTCTGTCCAGGGAGTGGGGTTAAGGTTAGGAACAGGTCTGGCTAGAACAAGAGGGAACAGTGCTGTTGCCTGGCTTAGTGCAGATCTGTGGGCCTGTAGCCAGCTCTGCATCAGGAACTGCTGTTGGGAAACCCTGAGAATAAAGTCCAGGGCATCTTCCCTGCTGTGGGGAAGTCTCCTCTACACTGATGCTCACAAGTGTCATTGACAGGCAGCGTGTATTACTGATGCTCACAAGTGTCAGCTATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGCTATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGCTATAGACAGCGTGTATTACTGATGCGTACAGTGTCAGCGATAGACAGCGTGTATTACTGATGCGTACAGTGTCAGCGATAGACAGCGTGTATTACTGATGTGTACAGTGTCAGGGATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGCGATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGCGATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGCGATAGACAGCGTGTATTACTGATGCTCACAAGTGTCAGTGACAGGCAGTGTGTATTACTGGGTCAAGTTGAGACAAATCAAGGTACTGTCTGAGCTCTGACCAGCCACTGAAATGGTAATAACAGATCTGAAATCTGCTCCTGTGAAATCGTAGTTTCTTGTCAGAGGCTTGATCCAGTCAACAGGAGGCTATGTGTAATCCACACACTTGCTACCCACATGTGCTCAGTAGTCTAGTTAGGACATCTGGGAGCTGGAGAGAGGGCTGAGAAGTGAAGCACGTTGCCACTCACGTGAGAACCCGGGTTCAATTCCCAGCAAGCACTGTATTAAGCAGTTCACACCTGTAACTTTCATTCCTGAGGACCCAGTGTCCTCTTCTGGTCTCCAGACACCTGCCTGTACACAGCTAGTATGCGTAAACACACGCAGGCACACAAACAATCTTTTCAAAAACTTTTTGATCTGATAGAAGTTCATTGTTCCTTCATAAAAACTTTGAAGATACAATGTGTTTCAGGCCAGTGAGATGACCTACCAGGTAAAGTTGCTTGCCACACGAGTCTGGCAACCTGAGTTCTGATTCCCAGAGCCCACATTTAATAAAGGTGGGAAGGAAAACCTGACTGCACAGAGCTGTCCACCTGTGTGCCGTGGCCTATGCACCCACATGAACATATCGTGCACACACATAGACAGTGTTCTTTTTAATTGAAGAAAACTTAAGGGTAAAGCGTGTTTCCAGTGTCCACACACTGACCTCCTTGTGCAGGGTCTGAGGCAACTTTCTTGAGTGAACTGTGGGAACCATCTTCCTGGGAGGTGGTACATGAGCTGTGGGAACCATGATCCCAGGAGGTGGTACATGAGCCGTGTGATCCCAGGAGGTGGTACACGAGCCGTGGGAACCGTGATCCCGGGACGTGGTACACGAGCCGTGGGAACCGTGATCCCGGGAGGTAGTACACAAGCCGTGGGAGCCGTGATCCCGGGAGGTGGTACACGAGCCGTGGGAGCCGTGATCCTGGGAGGTAGTTACAAGTAGATTCTGCTTACTGAGGTTTGGGTTTACTTCTTAAAAGTTAATAAGAGAACTTTTAGTTTTAAACTTTAGGTAGACCTCGGACCTGTGGTTTTCTAAGCTGATTGGACCAGGATCCCTCCTTCTGTTAGGCTGACTTATAAAGGGAGCCTGTGCCCACTCCTCCATGCTTGTGTCATTGGCCCCTTCTGTCCCTAAGCTCCTTGACCTTGGTGCTGCCGGACACCCATTTGCCCATACTCCTAAGAAACAAAGTATTTGTACCATATCTTGGGAGCGTTTTTTGTTGAAACACTGTTTTTAAGCGGATATGTCCGGACCACACAGTGTTCCTCTCCCTCCTGCTCATTTAAATGATGGCCTTTCCCTTGGGAGGGGTGGGGCTATGGGCAGTGCAGCGCTGGGCACCATACTGAGGGCCTCGTGCATGTTAGGCAGGCTCTGCTCCTGACCTGCACACCCAGCCTGACTTAGGTTTGTGTCTTGTGTTTGTTTTTAAGTCATGATGATGATTCCAGAGTTTGTAAGGAAAACCACTAGACAGCACAACATTTAGTTTATAGTAAGGTTATGGGGATAAAAGCTATCATTCAATAAATAACATTGTGTTGGTGGGGTCAAAGTTAAAACAAATTCTTCCTCTCTTTATTCTAAAATAAACTCTTAGAAGAGTACAATTTCAAATGTAAAAACCAAAACAACTGCAAAACATGTGAGCTGATTGCCATGAAGTAGAAGGAGAGAACCCTACAGAAGTTATTAAGGATAAAGTGGATAGCTTTGCTTTTATAATAGTGAAAGGCCTTGTGCTTTTCATGTTTATAGAAACTAAGGAGCAAAGGAAAAACTAAGTACATTAGCTACCATTTCCTTTCATCTTAACAGAAGTTAAAATTTGAGACCCAGGATTGATAAAATTATAGGAAAAGCAGCTCTTGGTAAGTTCTTCAGAGTGCCTGGTAATCCCATCGGAATTTGAGCTGTCAGGATCTCTTGATCCTCACTGCAGCAGTCTGTACTGCACTTGGAAGCAGTGAAAACCCAGCAGAGCAGGAATAGCTAAAGCAGATCATGCCATGTCTAACCATCGAGTGCTCTCATCCACTCAGCAGTAAGGGGAGATGAGTGGGCGGGGCTGAAAGGCTTCCCTCTGGTCATCAGACTTGAATGATGTCAACACACGGTATTTTCCACATTTTATTATAAGGAATTTCAAAGTACCTTGAACCCTCATCCCTCCACCCTCTGGATTCTCCTATCCCGTGCTCAGCATAGGCTCCGTCTTGTTGTTGCTGTGCTCCAGAGTGATTGCTTCCATCTTCACACTCTACCCCGAGATGCCAGCAGTGTTAACTAGTAGTTAATACGCATGCATTTGCTTTTTTCCGTCTGTTGAGGGAAGGTTTTGGGAAAGTTTTCTTTGCTTAGAGAACCTGATGCAGAATGATGAGTGGTGGTATTGTGCAGGGTCAGGCTCTAGGTGTGTGCAGACTGGCACAGAGACAACTGTGGAAAGTTTCTCATAGCCTTTGCATCTGCGGGAAAAGGTAGGGAACTGGAGAAATGGCTCGTCAGTTAACAGGACTGGCTGCTCCAGGGAACTGGTTCCAGTTCTCAGTACTACAGGGTGGCTCAGAGCCACCTCCACCTCCAGAGGTTCCAACACCTGTCCTCCACGGGCACCAGAACATGCGCACAAACATAAAGTGTCAAGAGGTGGGGAGAACTGAGACGATTGAAGGTAGAGCTACAGCACTGAGCAGGTGTTTAGCAAACCAGGTCATTCCCCAGCTGCCTCAGGCTTGCTGTGTGTGGGGGAGGGTTGGGGGGGAGTCCACAAGTGACTGAACTTCTGCGATGGCCTTTCTGCATCAG
Seq C2 exon
AGCGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322:ENSMUST00000109384:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=84.0)
A:
NA
C2:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(27.1=30.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types