RnoINT0154399 @ rn6
Intron Retention
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160449428-160453110:-
Coord C1 exon
chr3:160452963-160453110
Coord A exon
chr3:160449555-160452962
Coord C2 exon
chr3:160449428-160449554
Length
3408 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CAATGGTCTTTCTGCATCAGAGC
3' ss Score
4.91
Exon sequences
Seq C1 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAAGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTTTAGTAGCCTGGAATCTGCCACATACAGCAACAG
Seq A exon
GTATCTTTTGCGCAGCTGCTGGCCTCGGGGATGTCAGAACATTTGACTCTGAAGGCTGGGATGTAGCTCAGTGGGAGAACACTTGCCTACCATGGGCCCTGGGGGTTGGGGTGTAGCTCAGTGTACCTCCTTGCCTACACAGATTCCTGATTATGGAGGGGCTCGGGTCCTTTTCAGATAGTCGTGTGCATTCCCACCTACCCAAGGACTGCAACAAGTTTTAAAGGGGTAGAGACTGAAAGAGATGCTAATGGCGGTAGTCATCATTGTCTAGAATTCTATCCTAGACATTTAAGCTTGCAGTCCATCCTGTGGCTGCTTTAACTCACCTATTTCTGACAGTTGTGGCCAGTGAGTGGAGTTAAGGTTAGGTACAGGTCTGGCTATCTGGCTGAGTACAGACCTGTGGGCCTGTAGCCAGCTCTGCTGTTGGGAAACCCTGAGAATAAAGGCACAGGAGCCAGGGCACCATCTGTGTTGTGCGGAACCCTCTGCTCTACACTGATGCTCAGAAGTGTAGGTGATAGAGAGCAAATATTACTGGTTCTTAAAGTTGAGAAAGGCAAGGTGCTTTCTAAGCTCTGACCAGCCATTAAAATGGTGCTAACAGAACCAGAATCTGCTCCTGTGTAATTGGGTAGTTTATTGTCAGAAGCTTGCCAGTCCACAAGAGACTGTGTGTCTGTCTAATCCACCACTTGGTACCCACATACACTTAGTAGTCTAGTTAGATCACCTTTAAGCTGGAGAGAGAGCTGAGAAGTAAAGAGCATTTGCCACTCATGTATGGACCCAGCACCATATTAAGCAGTTAACCCTTGTAGCTTCCATTCCTGAAGACCCAGTGCCCCCTTCTGGTCTCTCCAGACACTGCCTGTACACAAGTAGTGCGCTTAAACACACGCGGGCACACATAAACAATACATCTTTTCAAAAACTTGTGATCTGATAGAAGTTCATTGTTCCTTAATAAAAACTTTTAAGATAAAATGTGTTTCAGGCCAGTGAGATGACTTACCACTCAAGTCTGGCAACAACCTGAGCCCACATTTAATAAAGGTGGGAAGGAGTACCTGATACACAGAGCTGCTGTACTTACCTTGGCCTGTGCACCCACAGAACACATCACACACTTAGACAGCGGGGTTTTAATTGAAGGGAACTTAAAAGTAGAGCACGCATCAGATGTAATGAGGTGATTTGGTCCACATTCTGAAAAATCCTCAGGCAGGGTCCAAGGCAACTTCTTCAATGAGCTATGGGAACTGTGTTCACAGGAGGTGATACTAGTGAATTCTGCTCACTTAAGTTTGGTTTTGTTTCTTAAGAGTTAAAAAGAAGGACTGGAGAGGTGGCTTAGCAGTTAAGAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAACTCCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTCTGGTGTGTCTGAAGACAGCGGCAGTGTACTCACGTACATTAAGTAAATCTTTAAAAAAGAGAGAGAGAGATAAAAAGAGAACTTTTAGTTTTAAATTTTAGATAAACCTTGGGCCGTGGTTTTCCGAGCTGATTGGACCAGGGTACCTCCTTTTGTTAGGCTAACTTGTATAGGAAGCCTGTGGCCTCTCCATGTTTGCGACATCAGTCCTTTCCTGTCCCTGAGCTCCTTGACCTTAGTGCTGCTAGACACCCATTAGCCTATATTTCTAAGAAAGTACCTTTTTCTTACCTTGGAAGAATGCTTGTTTGAGCACTGCTCTGTGAGCAGACATATCTGGGCCACAGTTACTCCCCCTCCTGCTCATTTAAACTGCGGTCTCTTGGGTGGGATGGGGTCTGTGAGGAGAGTGCAGTGCTGGGCATCGCACCGAGGGCCTCATGCATGCTAGGCAGGCCCTCCACTGCTGACCTGCACGCCCAGCCTGAGTGAGATGTGTGTCTGTGTTTGTTTTTAAGTCATGATGATTCCAGAGTTTGTCAGAAAAAAAATTAAGACTGCACAGCATTTAGTTTATAATAAAGTGGGGAGAAAAGATGTCGCTCAGTAAATAACATTGTGTTGGTGGGGCAAAAGTTAAGTACCAATTCTTCCTCTCTTCCTTCTAAAGTAAACTCCTAGAAGAGTTCAACTTCAAATGTAAAACCAAACAATTAGAGAACATTTGAGCTGATTGCCACACAGTGTGGAAGGAAACCCTATAGAAGTTATTAAGGATAAGTTGGATAACTTTGGTTCTGTAATGTTAAATGCCTTGTGAAAGAGGCCCAGCGTTTCATGTTTGTGTGAACTAAGGACCGGAGGGAGCTAAAGTACTTTGGCTCCCATCGCCTTCCGTCCTAACAGACATTAAGGCTTGAGACCCAGGAGTGATAAAATTCTAGGGGAAGAGACTCTTGGTAAGTTCTTCAGAGTGCCTGGCACTACAGTTGGAATCCGAGCTGTCAGGATCGCTTGGCCGTCCCTGCAGCGGTCTGGACTGCACACACTGCAAACCGTGAAAATGGATGCAGGGCGGGAGTTGCTAAAGCACACGATGCCGTGTCCATCTAGCCAGTGCTCTCATCCACTCAGCAGTGAGGGACGATGAGTGGGCGGAGCCGAAAGGCGTCCTCTAGTCTGCAGACTTAAATGATGTTAAACCACGGGGTATTTCCCACATTTTATTATAAGGAATTTCAAAGTCTCAAGAACACCCATCTATCCACCATCAGATTCTCCAGTAGTTACATGATGCTGGGGACCCTATCCATGCTTAACATAGACCTCCATCTTATTGGTGATGTGTTCCCAAGTGATTGCTTAAATCTGTACACTCCACCCCTGAGATGTCCGCATGCTTAGTGCTAACTAGTATTTAATACTCGTGCATTTGACTTTTTTCCATCTGTTGAGGGGAAGGTTTTGGGAAACTTGTTTGCTTAAAGAACCTGATACAGGATGGTGAGTGTCAGTGTGGTGCTGGGTCAGGCTCTAGGTTTGTGCAGACTCACTGCCCCTCACTGACGCTACCCCCTTGAGCAAGTCCCTTGACTCCAGAGCCAACTGTGGAAAGCTTCTCATAGCCTTTGCATCTGCAGAAAAGGGTAGGGAATTGAAGAATAGCTCATCAGAGGACTGACTGCTCCAGGGGACCAGTTCCAGTTCTCAGTACTGACGTGATGGTTCAGAGGCTCCAACACCTTCTGTCCTCCACGGGCATCAGCACATGTGGTGGTCACATGCTCACAAGGTGTCAAGAGCAGGGCTAGAACTGAGACCATTGAGGTAGAGAGCAACAGCGCAGAGCGGGTGTTTAGCAGACCAGGTCAGTCCCCAGCTGCCTCCAGCTTTCTTGGGGGGAATCCACAAGTCACTGAGCTTCTGCAATGGTCTTTCTGCATCAG
Seq C2 exon
AGCGCTATGTCATCTGGTCCTGAAGCAGTACAAGGAGGCAGAGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCCTTTTACAGACGCGCTCAAGCCTACAAGGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799:ENSRNOT00000040156:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=FE(30.8=100),PF134141=TPR_11=PU(61.8=84.0)
A:
NA
C2:
PF0499812=RNA_pol_Rpb1_5=FE(26.4=100),PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]