MmuINT0163993 @ mm10
Intron Retention
Gene
ENSMUSG00000026849 | Tor1a
Description
torsin family 1, member A (torsin A) [Source:MGI Symbol;Acc:MGI:1353568]
Coordinates
chr2:30967090-30967933:-
Coord C1 exon
chr2:30967674-30967933
Coord A exon
chr2:30967356-30967673
Coord C2 exon
chr2:30967090-30967355
Length
318 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
AGTGATCTTTCCTTTCTCAGCGC
3' ss Score
8.43
Exon sequences
Seq C1 exon
GAAATACGAGTCTGGGCGGTGCGCGGGGTACGGTGGGCGCTGGGCGGGCGCTGGGCGCGCAAGGTGCGCGGGTCCGGTTATGAAGCTTGGCCGGGCCGCTCTGGCCCTGCTGCTGCTGGCGCCGTGCGTGGTTCGTGCGGTGGAGCCCATCAGCCTGAGTCTGGCCCTGGCCGGCGTACTCACCACCTATATCTCCTACCCTCGTCTCTACTGCCTCTTCGCCGAGTGCTGCGGCCAGATGCGGAGCCTCAGCCGGGAGG
Seq A exon
GTAGGCGGGCACCAGGCGTCCGGGATGCTGCGGCAGGGGGATGGCGCCGCTGCCAGGCCAGACTTTGGCCGGAGGCCTGAGAGATGAGTGGTCGGGGCCCGGGGTAGGGTGTCAGCCCTGCGCGGAGCTCTCCGGGGCGGCCTCACGGCACCTCTTCCGCTTGGCTTTGGGGCCAACCCCGAGGAAGGGCAGAGTTCGCAGCACCAGGGTCCCTCAGCGCTCTCCAAACCAGGCTCCGCGGGCCCTGACGTCCTGGAAATGGGGCTGCCTTTTGCCAGCTTGTTTCTCTCCTGACCAGAGTGATCTTTCCTTTCTCAG
Seq C2 exon
CGCTGCAGAAAGATCTGGATAACAAGCTCTTTGGACAGCATCTTGCAAAAAAAGTCATCCTAAACGCCGTGTCTGGTTTCCTAAGCAACCCGAAGCCCAAGAAGCCCCTTACCCTCTCTCTGCACGGGTGGACGGGCACCGGCAAAAACTTCGCCAGCAAGATCATCGCGGAGAATATTTACGAGGGCGGACTGAACAGTGACTATGTACACCTGTTTGTGGCCACGCTACACTTCCCCCACGCCTCTAACATCACACAGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026849:ENSMUST00000028200:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=26.2)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCGTACTCACCACCTATA
R:
GTGTGATGTTAGAGGCGTGGG
Band lengths:
348-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types