RnoINT0154623 @ rn6
Intron Retention
Gene
ENSRNOG00000006894 | Tor1a
Description
torsin family 1, member A [Source:RGD Symbol;Acc:628863]
Coordinates
chr3:9806482-9807328:-
Coord C1 exon
chr3:9807100-9807328
Coord A exon
chr3:9806748-9807099
Coord C2 exon
chr3:9806482-9806747
Length
352 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
AGTGATCTTTCTTTTCCCAGCGC
3' ss Score
7.51
Exon sequences
Seq C1 exon
CGCGGGGAACGGTGGGCGCTGAGACGCGCAAGGTGCGCGGGTCCGGGCATGAAGCTGGGCCGGGCCACTCTGGCCCTGCTGCTGCTGGTGCCGTGCGTGGTTCGTGCGGTGGAGCCCATCAGCCTGGGTCTGGCCCTAGCCGGCGTACTCACCGGCTATATCTCCTATCCTCGCCTCTACTGCCTCTTCGCCGAGTGCTGCGGCCAGAAGCGGAGCCTCAGCCGTGAGG
Seq A exon
GTAGGTGGGCATCAGGCAGCGGGGATGCTGCGGCAGGAGGATGACGCCGCGGCCAGGACAGACTTTGGTCAGAGGCCAGGGAGGTGAATGGTCGGGGCCAGGGACAGGATGTCAGCCCTGCGCAGAGCTCACCGGGGCGGCCTCACGGCGCCTCTTCCGCTTAGCTTTGGGGCGCAGCCTGGCAGTAGCCCGAGACATCTCAAGGCCAACCCCTAGGAAAGGGCAGAGTTCGCAGTACCAGGGTCCTTCCGCGCTCTCCAGATCAGGCTCCGCGGGCCTTGACAGCCTGGAAATGGGGCTGCATTTTGCCAGCTTGTTTCCCTCCTGACCAGAGTGATCTTTCTTTTCCCAG
Seq C2 exon
CGCTGCAGAAGGATCTGGATAACAAGCTCTTTGGACAACACCTTGCCAAAAGAGTCATCTTAAACGCCGTGTCTGGTTTCCTAAGCAACCCGAAGCCCAAGAAGCCCCTCACCCTCTCCCTGCACGGGTGGACAGGCACCGGCAAAAACTTCGCTAGCAAGATCATCGCAGAGAATATTTACGAGGGTGGACTGAACAGTGACTATGTACACCTGTTTGTGGCCACGCTACACTTCCCCCACGCCTCTAACATCACCCTGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006894:ENSRNOT00000064660:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(12.7=26.2)
A:
NA
C2:
PF063096=Torsin=FE(69.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGTACTCACCGGCTATAT
R:
ACAGGGTGATGTTAGAGGCGT
Band lengths:
350-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]