MmuINT0168755 @ mm10
Intron Retention
Gene
ENSMUSG00000026670 | Uap1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:MGI Symbol;Acc:MGI:1334459]
Coordinates
chr1:170147996-170149459:-
Coord C1 exon
chr1:170149271-170149459
Coord A exon
chr1:170148047-170149270
Coord C2 exon
chr1:170147996-170148046
Length
1224 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
GCTTATTTATTCCTACATAGCAG
3' ss Score
4.43
Exon sequences
Seq C1 exon
GAAGTTTGTGGTGTATGAAGTATTACGGGAAGATGAGTTTTCCCCGCTCAAGAATGCAGACAGTCAGAACGGGAAGGACAACCCGACCACAGCAAGGCATGCTTTGATGTCCCTTCACCACTGCTGGGTCCTCAATGCCGGGGGACACTTCATAGATGAGAATGGCTCTCGCCTCCCAGCCATCCCCCG
Seq A exon
GTAAGTCACTGTCTTTGCTTTTGTGTGTGTGTGCTGCTTTCAGCTTCTTCCTTTTCTGTCTGATGTATCCCTAGATCTTGCTTATTTATTTTTAAAGTAGCTTTGTGTAAGTAGTTGCTGATGTAAAGTGACCGTAGCTTTGCCCATTACGAAGAGAATTCCAGCCTCAGTTCTCTTTAAGAGAAAGCTCTTGAAGAGCTCTTTTTGTTTTGGAACATCCTTATTGTGTCCATGAAATAATTTTTACTAATGGTCAGATGGGGTTATTTTAGTGTGTCATGTGACCAAAGCCATTAACAACACACTGTACTACAGGCGAGGTCCTTAAGCACAGAAATTGTTTCTGCTGTCATATGTCTATTTTCGAGGCCCACCAAGACCTTGCTTACCCACAGGCTGTGCCGTGCTCTCACCACGGCACTGGAGAGGGTGCCTTGAAGGAAAGTGAACACCAGTTACATTTGCTGATACTCAGACCTCACAAGTATTTTGGGTTTTAGATGATAAGACAAAAGGCACTTGGAGCTTTTCACGTTTCAGATAAAGCACTTTTAACCTAAGTCCTCTATCTTCTAATAACAGTTGCTGGCACCTGGAAATGTCCCTTTCAATATCTTTTGTGGTTTTGTACTTGGGTGAATTATTTTGCCGTTTAAGTTTGTTCTTTTTGTTTGTTTTGAGTTTTTTTTTTTTTTTTTTTCTTTTTGAGTCAAGTCTTCGCTATGTAGCCCTGGCTGTTCTGGAACTCATTCTGTAGGCCAGGCTGGCCTTGAACTCATAGAGATCCACCTGCCTCTGCTTCCAGAGTGCTGGGATTAAAGGAGTGCACCACCACTACCTGGCTTAATTTTTGTTCTTAAGAGATAAAATTCTGGCTGCATGCACCACAGTGCTAAACAGCCTCAAGCACTGGGCGGCTGGGCCGTGGAGTGCACTGTCCCCTGACCATGCTACCGGGAGTAACAGTGCTAGCTTGTCTTTCAGTCCAAGGCCAGTTAGGCAGGCTCTGCCTGCTCAGCAAGCTTGCTCTGTGACATGTCACACTATTCTCATGCTCATCTGCCATTGAGTTTGGTTTTTCTGATTTATATTTTTTTACTGCTTCTCATGCCAGGTTTATGAGTCACCACAAGGGCATGCCATTGGGTTAAGTATAGTTTGCAGCTCCACCTCGTTGTTATTATTTGTTTCCATTCCCATTAATGCTTATTTATTCCTACATAG
Seq C2 exon
CAGTGCTACAAATGGAAAGTCAGAGGCCATCACAGCTGATGTCAATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026670:ENSMUST00000111351:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=NA C2=0.614
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(14.7=100)
A:
NA
C2:
PF0170413=UDPGP=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTGGTGTATGAAGTATTACGG
R:
TTGTGATTGACATCAGCTGTGA
Band lengths:
238-1462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types