MmuINT0168780 @ mm10
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20681323-20682004:+
Coord C1 exon
chrX:20681323-20681514
Coord A exon
chrX:20681515-20681902
Coord C2 exon
chrX:20681903-20682004
Length
388 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TATTCTCTTTCTTATTGCAGTAC
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCAAGCTGATTGCAGGGAAGATCATCCCAGCCATTGCCACAACCACAGCTGCTGTGGTTGGCCTTGTGTGTCTGGAGCTCTACAAGGTAGTTCAAGGGCACCAACAGCTCGATTCCTACAAAAATGGTTTCCTGAACTTGGCCCTGCCCTTCTTTGGGTTTTCTGAACCTCTTGCTGCACCTCGTCACCAG
Seq A exon
GTAGGTGCCCACATGCAAGATAGACCTATAATAAAGTGTATCTCAATAGAACTTGCTTTGGTTTGCATTAGACCTGGTCACTAGGTCAGAGTTCCAATCAAAATATGCCTGCATCTTTTTTTGCAAGAGTACTAAGGAAATAAAAGACAGTAGATCAGAGTGATTGAGAAGATAGTGGGTAGAAGATGAGAATGGGGTTTTCCTTGTGGCATACGACCTGTCATTGTAAAGGTTCAGTGTTTACTCAGTGACATGGGAGCCATGAGAAGGCTTTGAACAAAAAAGGTTATGATCTAACTTAACTGGGTCTGAATGCATCAGGGCAGGGAAGGCAGGGAGGGCAGGGACTTCTGGAATGGACCACATCCTATTCTCTTTCTTATTGCAG
Seq C2 exon
TACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTGCAGCCTAATGGTGAGGAGATGACCCTCAAGCAGTTCCTTGATTACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924:ENSMUST00000089217:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGATTGCAGGGAAGATCA
R:
GTAATCAAGGAACTGCTTGAGGGT
Band lengths:
286-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types