GgaINT1029070 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2428437-2429965:-
Coord C1 exon
chr12:2429774-2429965
Coord A exon
chr12:2428640-2429773
Coord C2 exon
chr12:2428437-2428639
Length
1134 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
GCTCCCTGCTCCCCTCGCAGTAC
3' ss Score
8.23
Exon sequences
Seq C1 exon
AGCCAGCGCATCGCTGGGCGCATTGTGCCCGCCATCATCACCACCACAGCGGCCGTGGCTGCCCTGGCGTGCCTGGAGGTTTACAAGCTGGTGTGGAGATGCCGAGACCTCCGGTGCTACCGCAACAGCAACTTGTTCCTGTCTGAGTGCCTGTTGTTCCGCATCCAGCCCCTGCCAGCCCCCACGTACCGG
Seq A exon
GTAGGACCCCCTCTCCTTGGGGCGCTCCAGCAGCCCCACGGCGTGCCCCACGGCTAGCGTGTGTGGGGCTGCAGCAGCCACTCGCATCTGGCTGATGGGAAGCAGCTGCAGCAGCCGGCGAGCAGCTGGCACCGGGCCCGGGGCTGCCTGCGGCTGCGGGGGGAGCAGGGCCGGGGTTCCCCCCCTTTCTGCCGGAGGGGGGAAAGCAAAGCCACGTCAGGGGCTGGGGGGCAGGCCCAGATTGGGACCGTCTGGGCGATAGAGGCCCCTTTGTCTGGGGGTTTATGGCGTGCGAGGCAGCCCTTCCTGCGCGGCAGGAAGCGCCGATTGGAACCAGATTGGCCCGGGGGGCCCAGGGCCGGGGGCAGGAAGAGGGGGAGGGAGGGAAGCGCCTTCATCGCCTCCACACCGGCTGCAGCTTGGCTTCAGGCTGCCCAGCCACCCCACGGCCCTCCTGCCACTGCGCCCCGCTGCCCGGCCCTGTGCCGTAAGCCTCAGGGCGGCCCTTTGAGGGCCGTGCCGCCATGGATGCAGTTGGCACCATGCCAAGGCAGAGGATGCTGCTCTGGTGCTCCGTGCCCTTTGGTCCCCATCTGTGCCCGGCATCCTGCTCCGGGGCCCCCGCTGCCACTCCGTGACACTTCGTGCTGGGACGTGGCAGTAGAGCTGTCCTATGGCTCGGTGCCCGGTGGGACCGTGGGGTCCTGAGAGCCCGCCGTGGCCGTGGCCTGGGGGATGTGGCGTGTGTGTGGTGGTGCGGATGGGGTTAAGGCCTCTCCCGGCGCAGGCAGCAGAAGGCAGGAGGCGAGGGCGGCCCGCTGCCAGCATCCGCGGGACACGGCCGGGGCCAGCACAGCACTGCCTGCAGCGGGGCAGATGGAGGACGGCCACGCCAAGTGCTGGGGCCGCATCCTGCACTCGGCCTGCAGCCGGGGTCACAAAACCCCGGGGGCCGCAGGCACAAGAAGAGGCGATTGTGTGGGGCTGGGCTGCTCGTCAATGGGGCTTTGTGCGTGGTTGGGGCCAGCGGTGCCGGGGGGTGGCTGTGTCCCGTTCCCAGCTCCCTGTCCCTGAGCCCCCTCTCCTCAAACCCCCGTCCCCAGCCCTGGTCAATGCTCCCTGCTCCCCTCGCAG
Seq C2 exon
TACCGGGGGAAGGAGTGGAGCTGCTGGGACCGGCTGGAGGTGCGTGCTATTGGGGAGGACGGGCAGGCGATGACGGTGCGGGAGCTGCTGGCCTGGCTGCAGGAGGAGCACGGCTGGACCGTCACCAAGCTCCTGCGTGGCAGCACCATGCTGTACGACGGGGAGGAGGATGAGGAGATGCGGGCACGGCAGCAGGCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(49.3=51.6),PF093585=UBA_e1_C=PU(19.2=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(53.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATCATCACCACCACAG
R:
CATCTCCTCATCCTCCTCCCC
Band lengths:
343-1477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]