RnoINT0159034 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116760215-116762123:+
Coord C1 exon
chr8:116760215-116760406
Coord A exon
chr8:116760407-116762030
Coord C2 exon
chr8:116762031-116762123
Length
1624 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CCCTCACCTCCATCCTGTAGTTC
3' ss Score
7.09
Exon sequences
Seq C1 exon
ATCAAGCAAACCATCGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCGGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGTGGGCCACGGCCCCTTGGCACCTTTCGGCACAGCTACCTGCACCTGGCTGAAAACCACTTCATACGCTCAGCACCTTCTGCCCCGGCCATGCAGTCG
Seq A exon
GTGAGCCTCTGATGCCCCTGTTCCCATTAGCCCTGAATTTTTCCTCTACTCACACTCTCTCTAGCTGTAGCAAACAAGTCCTCTCTCTAGCTGTGGGCTCTCTCTAGGCCCCAGACTATGGGGGAGTCCTCTGACTCCATCCAGCCCTTTTCCTGCTATGAAGTTAGGCTGGGACCTGTCAGACACAGGAAACAGCCATCAGCCATACCCCCCAACCCCCCTGCAGTTCAGGGTCTGAGGGAGCTGCAGCTTTAATTCATTAGTGGAGCCAGACGTCCCCCATGGCCCCCTCCTACTCCGTAACATCCTGGTGGGAAGGAGGAGGGAGGGGCAACCCTAGGCTCAGCCCCAGAAAGAATCCAGCTTCCCTCTGTAGAGCCATTCTGTTCACCTCAAGCCAAGTTAAAGGGCACCAGACTTGCTATCATGAGTGTGGGTCTCAGCCCAGTGGGATGTTTATACTATCACATATGAGTGCACCAGGGTCTGGGCATCCCTGGTATGGGAACACGGAGGGATCGAGCTTGCACATCTGTGTACCAGATGGAAGATCAAGGATCTTCCTCGATGTGAACATGTGCGTGTGGGCACATAATGTGGGGGCTGTTGGTTTTGTGTGTGTGTGCGGTTGTTCCTATGAAGGCAGGATGGCAATGCCTCCAATTGTGTGCCCAGGCCCTGCCCCAGTTGGCATTTCCCCGAGGCACAGGAAAGAGGACAGAAGAAATGCCCTCATCAGGAGAGAGGACAGAGGTCACCAGCTAGCCTAGGGTCCCTCTGGACAAGCACACAGAATGCTTTTGTGAGGTGCCCCACTGTTAACCAGCACAGAGACTGCCTTTGTCCACAGAATGGGGGTGGGTAAGAGTCCCCATCATGCCTCTAGCCTAGTCTCTGCTCGACCCCAGTATACTCTCTGATGGTTGGGAGGCCCCTTTGTGCCGGACTCTGGATGTCTGCTACATCATCTGTCCTCAGATATAGGCACCAAAACTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGGCCTAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGGCACCAAAACTTTTGACCTGGGAAGAAGACGGGACAAGAATAAAGGCTTCTCTAGACTGTATCCCTGTTAGTGGGGACCCTCTGAGTCAATAGAGTTCCATTGTTACTGAGCTCTTGGTTTCTGCATTCCCCAAACCCTATATGTAAGGACTGGGGAGCGGCATGAGCTGTGTCTCCCAGGTCCCAGCCTCCCCTTAGAAGAACAGGCAGCTTTATCGGAGAATACAGCCACACAGCTCCAGCTTCCTCAGGAAGCAGTCCCAGCCTCCCTCCCTCCTGCTGGCCCGTTCGATGGACGTCTGTTTCCCCATACAGGGCCCCATAGCTCCATTTCCTGTGCTGGCCCCAGCCTGGGCGAGGAGGGGGCTGAGACTCTGGGCCCAGATCCCACCTTCTACCCCCCACCCCTTGGCTGCAGCTTCCTGCCACTAGGGCAGCTCCTCTAGGAAAAGCTGCTAGTAACTGGGCCAGGGCTCGCAGGTTTGTGTGAGAACTCTCTAAATTCCCTCACCTCCATCCTGTAG
Seq C2 exon
TTCCATCACCTGGAATGGACCTGTTGGCACCGCCTGACGGTGCCTGCTGGGCAGCCTGAGAGGACACTGGAATCCCTGCTGGCCCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAACCATCGGCCGGATTA
R:
GAGATGGGCCAGCAGGGATTC
Band lengths:
278-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]