MmuINT0168884 @ mm10
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107981390-107983189:+
Coord C1 exon
chr9:107981390-107981581
Coord A exon
chr9:107981582-107983096
Coord C2 exon
chr9:107983097-107983189
Length
1515 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CTCTCCTCTCCATCCTGTAGTTC
3' ss Score
8.39
Exon sequences
Seq C1 exon
ATCAAGCAAATCGTGGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGTCACAGCTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCG
Seq A exon
GTGAGCCTCTGATGCCCCCTGTTCCTACTGGGCCTGAATTTTCCCTCTACTTGCCCAAGCAAACAGTTCTCTCTCTAGCTGTGGGCTCTCTCCAGGCCCCAGACTATGGGGGAGTCCTCTAGACTGCATCCAGCGCCCTTCCTGCTATGAAGCTAGACTGGGACCTGTCAGACACAGGAAACAGCCATCAGCCATACCCCCCAGCCTCCCTGCAGTCCAGGGTCTGGGGGAGCTGCAGCTTTAACTCATTAGTGGAGCCAGACATCCCCCATGGCCCCCTCCTTCTCCTTCTCCGTAATATCCTGGTGGGAAGGAGGAGGGAGGGGCAACTGTAGACTCAGCCACAGAAAGAATCTAGCTTCCTTTTGAGGAGCCCTGTTCTGTTCACCTTAAGCCAAGTTAAAGGGCATCAGGCTTGCTACCAGGAGCGTGGGCCTCAGCCCTATGGGACAGAATGTTTATACCACTACATAGGAGTGCACCAAGGTCTGGGCATCCCTGGTATGTGGACATGAATCAGGCTTGCACATCTGTGTGCCAGATGGAGGAACAGGATCTTCCTCAATGTGACTATGTGCGTGTGGGCACATACGTGGGTGCTGTTGGTTGTGTGTGTGTGTGTGTATGTTGGGGGTGGGTTGTTCCCATGAAGACAGGATGGCAATGCCTCCAACTGTGTGCCCAGGCTCTGCCCCAGTTGGCATTTCCCCGAGGCACAGGAAAGAGGACAGAATAAATGCCCTCACTAGAAGAGAGGACAGAGGTCACCAGCTAGCCTAGGGTCCTTCTGGACAAGCACACAGAACCCTTTTGTGAGGTGCCCCACTGTTAACCAGCACAGAGGCTGCCTTTGTCCATAGAATGGGGGTGGGTAAGTGTCCCCATCCTGCCTTTAGCCTAGTCTCAGCTCGACCCCAGTATGTTTTCTGATGGTTGGGAGGGCTGATGCCTGCTACATCATCAGCCCTCAGCTATAGGTACCAAAACTTTTGACCTGGGAAGAAGATGGGACAAGGATAAAAGTTTCTGTAGACTGTATCCGTGTTAGCAGGGACCCTCTGAGTCAATAGGGTTCCACTGTTACCATGCCCTTGGTTTCTGCATGCCGGCGAGCAGTCTGAAGCCCTGTTTGTAAGGGCTGAGTAGCATGAGCTGTATCTCCAGGCTCCCAGCCTCCCCTTAGAGGAACAAGCTGCTTTATCGGAGACTCCAGCGACGCAGCTCCAGCTTCCTCAGGAAGCAGCCCCAGTCTCCCCCTCTCCAGCTGGCCTGTGCGATGGACGTCTGTTTCCCCATACAGGGCCCCATAGCTCCATTTCCTGTGCTGGCCCCAGCCTGGGCGGGGAGGGGGCTGAGACTCTGGGCCCAGATCCCACCTTCCGCCCCCCCACCCCTTGGCCGCAGCTTCCTGCCTCTAGAGCGGCTCCTCCTCTAGGAAAAGCTGCTGGTTAACTGGGCCAGGGGTTGCAGGTTTGTGTGAGAAATCTCTAGATCCCTCTCCTCTCCATCCTGTAG
Seq C2 exon
TTCCGTGACCTGAAATGGACCTGTTGGGACCGCCTGAAGGTGCCCGCTGTGCAGCCTGAAAGGACACTGAAGTCACTGCTGGCCCATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596:ENSMUST00000035216:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCAAATCGTGGGCCG
R:
GATGGGCCAGCAGTGACTTC
Band lengths:
280-1795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types