HsaINT0176114 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49806073-49807927:-
Coord C1 exon
chr3:49807736-49807927
Coord A exon
chr3:49806166-49807735
Coord C2 exon
chr3:49806073-49806165
Length
1570 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CCTCCTCTACCTCATCCCAGTTC
3' ss Score
6.88
Exon sequences
Seq C1 exon
AGCAAGCGAATTGTGGGCCAGATTATCCCAGCCATTGCCACCACTACAGCAGCTGTGGCAGGCCTGTTGGGCCTGGAGCTGTATAAGGTGGTGAGTGGGCCACGGCCTCGTAGTGCCTTTCGCCACAGCTACCTACATCTGGCTGAAAACTACCTCATCCGCTATATGCCTTTTGCCCCAGCCATCCAGACG
Seq A exon
GTGAGCCCATGATACCCCACCCTTAGCCCTACTAGGCCTGGGTTTCCCCTGCACCTGCCCATACAGGCCCCAATCTAGCTGCCGGCTCTCACTGAAACTCAGACTGTGCAGAAGTCCTGAAGACTCCCTCCAGCCCTCTTCCTGCTATGAAGCCAGGCTGGGACCTGTCAGACACAGGAAGCAGCCGTCAGCCATCCCCACCCCCAATCCTCCAAAGCCCAGGATCTGGGGGAGCTGCAGCTTTAACTCATTAGTGGAGCCAGACATCCCCCACAGTCCCCTCCTTCCTTGGAGTACCCCTGAGGGGTAGGTAGTGGGGAGGGGACCAGGGCATCAGCCCCAGAAAGAGTCTAGCTTCCCCCTGCATGGTACGGGGGCCCTGGCCTACCTCCTACAAGCTGAGTTAAAAGGTAATAGGCTTGCCACTAGAGGTGTGGGGTCTGCAGCCCTGAGTGTATTTGTGTCACAGTTGTGAGTGCAACTGGGGTCTGGGCATCCCCGGAGTGTGGGTATGGAAGGAGCAAGTTTGCACATCTGTGCATCAGATGGGAGTGCAGGGCTCCCATCTTCCTGTGTCCTCAATGTGGGCATGCATGGAGATGCATGTGGGCACACATGTGTGTGTTCCTGGGCTTGTGGGCATTTGTGTTCCTGTGACTGCAGCGCTGTGAATGCCTCCAGCCTTGTGCCCAGGCTCTGCAGTTGGCATTTCCTTGGGGCAAGGATGAGGGTAGAAGGAATGCCCTCATGAGGGGAGAGGGCAGAGGTCATGGGCCAGCACTGGGTTTCTGCTGAGCAGCCTGGGGTCCCTCTGGACTAGCACACAGAGCCCCTTTGTGAGGCACCCTGCCTCTAACCAGCATACAGGCTGCCTTTGTCCACAGAGTGAAGCAGGTGAAGGAGAAGCCCCCATCTCACCTCTAGCCTAGTCTCAGCTTGACCCCAGTGTGTTTTCTCAGGGGCTGATAAGCACCCCCTGTCCTGGTCTCTAGATACCTGCCAGCCATCCTTCTGTCCTTAGCTCTAGGTCCCAGAACCCCAAGACTCTTGGAAGGAAGGAAGGGACAGGAGGAGGAAGCCTCTATGCATTGTATCCCTGCTGGGGTCTCTGGGACAGTGGGGCCCTGGTGGTCACTGTGCCCTTTGCCCCTGTGTCCCAATGAGTAGCCCAAGGCACTGGCAGTACATACAAGATTGGGGGACAGGATGTGCCCCCCAGCTCCCAGCCTTGTCTTTGAGGAACAAGCAGCTTTATCAGAGGCTGCAGGGGCCCTGCTCTGGGTTTCCTCAGGAAGCACCACCCCCTCATCCCCCACTCTCACAACTGGCCCATGTGATGGATCGTCTGTTTCCCTGTGCGGGCCCCATAGCCCCATTTCCTGTGCTGGCCCCGGCCTGGACGGGGAGGGGGCTGAGACTCTGGGCCCAGATCCCACCTCCCCCCCACCCCCCACCCCCTGGCTCCTGTTTCCTGCTAGTCCAGCTCTTCCCCTAGGAAAGGCTGCTGGTAACTGGGATGGGGGTTGGGGGGAGGTAAGAAGTCTCTGACTCCTCCTCTACCTCATCCCAG
Seq C2 exon
TTCCATCACCTGAAGTGGACCTCTTGGGACCGTCTGAAGGTACCAGCTGGGCAGCCTGAGAGGACCCTGGAGTCGCTGCTGGCTCATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAATTGTGGGCCAGATT
R:
CTGAAGATGAGCCAGCAGC
Band lengths:
282-1852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains