RnoINT0158933 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1723862-1724519:-
Coord C1 exon
chrX:1724328-1724519
Coord A exon
chrX:1723964-1724327
Coord C2 exon
chrX:1723862-1723963
Length
364 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TATTCTCTTTCTTATTGCAGTAC
3' ss Score
7.92
Exon sequences
Seq C1 exon
AGCAAGCTGATCGCAGGGAAGATCATCCCAGCTATCGCCACAACCACAGCTGCTGTGGTTGGCCTTGTGTGTCTGGAACTCTACAAGGTAGTTCAGGGGCACCAACAACTTGATTCCTACAAAAATGGTTTCCTGAATTTGGCCCTGCCCTTCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTCACCAG
Seq A exon
GTAAGTGCCCACATACAAGATGGACCTGTAATAAAGTATATCTCAATAAAACTTGCTTTGGTTTGCATTAGACCTGATCATTCTGTCAGAGTTCCAATCGAAATATGCCTGCATCTTTTTTGCAAGAGTACTAAGGAAATAAGAGTGATTGAGAAGATAGTGGGTAAAAGATAAGACTAGGGTTCTCCTTATAGCATAGGACCTGTCATTGTAAAGGTTCAGTGTTTACTCAGAGTGACATGGGAGCCCTGAGAAAGCTTTGAACAAAAGGTTATGATCTGACTTAATTGGATTTGCATTAATAAGGGCAGGGAGGGCAGGGACTTCTGTAATGGCCCACATCCTATTCTCTTTCTTATTGCAG
Seq C2 exon
TACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAATGGTGAGGAGATGACTCTCAAGCAGTTCCTTGATTACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
A:
NA
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCTGATCGCAGGGAA
R:
CTTAAAGTAATCAAGGAACTGCTTGA
Band lengths:
294-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]