MmuINT0169169 @ mm9
Intron Retention
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q (putative) 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55039649-55042842:+
Coord C1 exon
chr9:55039649-55039707
Coord A exon
chr9:55039708-55042793
Coord C2 exon
chr9:55042794-55042842
Length
3086 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTGCTTTCCTTTTTTTAAAGGTA
3' ss Score
9.96
Exon sequences
Seq C1 exon
GATAATTTTCCATTTGATCCTCCGTTTGTTAGAGTGGTGTTACCTGTTCTCTCAGGAGG
Seq A exon
GTAAGTTTACATATTTACTTTTTTTGTGATAGTATGTGTCAGAGTCCTTTGCAGAACTGTCTGGAGCCTGGGAGGTCAGGATTGCTGGACTTGACACAGGATTTTGTGTCAGGTAGGTTGAAGGGGCTTGAGAACTTACCTTTCTGAGAAGTTCTCAACTGAAACTGATAGTTTGGGGTCCACATTCACAACCACAGGTACAAATTACTTACTTATAAGCAGACATCCTAATGGAGTTTATTTATATGTGTTGACTCTTTAGAGATGAGTTTCAGCTGAGTGTACCTGCCTGTAATCTCAGTCTGTCAGAAACTGATGCAGGATTGTGAGTTCCAGGCCAGCTAGAGAGATCCTTCCAAATCTGTATCTGGATGTTAGGTAATATGGTCAGTAGCTATCAAAATACTGTCTTTAAAAATGTTTTTCAAATATAAACCACGCTTGAGGATTTCAGGAAAGTTTCCGTTACTGTGGTTCTCACAGGCCTGTGATGCTGAGTGTGGTCACAGTGATAATCCGGTAACCCGAGGCAGCTGTGGAGCTCATCTCTGCATAAATAGTTACTTAATACAATTGACTGGTGATTGTCATACATCCGTACTGAATTTTGTCCTGCTTCTTTTTGTAGTTATGAAGCTATGGGAGGCATGACAAAGATCAAGTTAATTATGATATATTATACAATCCCCCATATGGGCTTCACTAAACTACTTGTAGGGGAGCAGGGGCGATGGCTCCGTTGCTTAGAGTAGTTGTTTCTCTTGCAAAGGACTCAAAGTCAGTTTCTAGCACCCATGTGAAGTGACTTACGGCTACCCAGTATTTCAGCTCCAAGGGGTTTAATCCCCCTTCCGGCCTCTGCAGGCACACACATAAATGGAAAAAAAAAAAATCTTTTAAGAGTTCTCAAATCCTCAGCTAATTCTATTTTGTGAGATGAGTTCTACTGTAATAATAAAATCTAAAAACATTGCCCATAAGCTGATAATTCATGTATTTGAGACAGTAGTAGTGACTCCTAAAGAAAGACTTTAGATCTTCTCAGAAATAGTCTCTTTTAATATATAGATGTACAAAACAAATATAACTATAATTTTTTGTTTTTGTTTTTGAGATCACAACCTGGTAAAATTTCTCAATATAGTGAGAATATGTGTGGCCTGATGTTGGGAAGTAGAGTATGGCACAACTGGCCATGTGTCTGTAAAGCCCAGCAGGAACAGGCCTGTGTTTGTGACGTGTTGAGCCATTTAGATGTCTACAGTACTATCACGGAGTACTTCTTTAACAGATGACTTAGGTGGTCCCTGCAGCCTGCTCCTTTGTTACATCTTCCAGAAAGTTATGTGGTATATTAGGCCTTATGAACATCAAGCTCAATGATACTCATTCCAAAGGGACTTGTTGAAGACTTGGTGTGAATTTTTCCCCCCCACAAAGTCACTAAATAACAGCTCCTATTCTGTTTTCCACAAATCACTTAATAACTTCTAATTTTTTGTGGCCTGTTGGCATCTCAGAAGATGGCATCCTCTGGTTTACTGTTTGGGAAATGTTGCTCTTTCAGAAACCCAAAATCTTGAGCGATCCTCAGCAAGGCTGAAGTGATCCCTTAGACATCTTGCTTCTGCTTTTGGCAAACAGTTACAACGCTGATCACAAATGCTGTTAGGCTGAGTGGGAAATCACACACTCAGAGGGCACACACAAAGATGTTTCAAGTTGTCAAGTTTCATTTCGTTACCTTTAAACATTCCCGCATGCTTCTGGGTTAGGCAGTGAAGGTAGTTTTTCTATCATAAAGCCCATGGCTATTTTTGGAAGGAGAATATTAGGTAACCTAGCCAAATATTTACATACACAAAATAAACATAGGGTGGAAATATAGTGAATTTTAAACTTTTGTATCCCTTCCTCAGAACACCAGCCCTTTCCTAGCCAAGTGTAACAACATTAATTTTTTTTTACAGTTTAGTGTTGCTATAACATTGTAAATTCTGTCACAAGTATTTTTTTTCTCCTTTCTCTGGTAAGCATATTTAACGGTGAATATTGGATTTATCTGTCATTAACTGGTATGTAGGAAAAAGGAAATAATTTTTTAAAATGTTCTAGGAATGGAAGAGATGGCTCAGTTGGTAAAATGATTGCTGAGAAATTAGGACCTGAGTTGAGATCACTAGACCCTACATACAGTCTGGGTATGATGGCTTATTCCTGAAGCCTGAGCACTGGGGATGTGGGGAAAGGAGAATCCTTGAAGCTGTCTGGCTAGCCAGACTAGCAAATTGGTGAGAGGTTCATTGAGATACCCTGTCTTAAACAGTATGATGGGTAGCTGGGGTTACTTCTAGCCTCCATAGTGTATGTAACAGACACACACACACACCACATATATACAAAAGCGAGGAAAAGCACCCATAGTGATGGGTCCGACCTAAAGACTATAGATGAGATCCCATTGCCACAGGATCAAGTGTCAGAAGACCTAATGGAAGGAGGAGGAAGGTGGGAAAGCCTAGTGAGGGAACACCAAAGTAGCTTCTTTCATAGCGCAGCTACAAAACGAAGAAAAACTATTGGCTGATCTCAAACAACAATCTCAGAATCAGAAGACAGCTTAAATTTTGTATAAATCTATAGAAATGGAGGCATGTTAAGGGGGTATGTGGGCTCTATTGTGCCATCTCAACAAAACACTGAAGATTGAGACTGTACAGCTGTCTGCAACTTTCAGCAGAGTTGTCAGCCTTGCAACAGAGGTGCAGAGAAAGCTCCAGAGACTGAATAACATGAGTGTGTGGCCATTAAGAAAACAGATTCTTTTGCTCCTGTTCTCTGGGATGTTTGGAGCCAAGTTTTTAATTTTTGACATCAGAAAAGTTTAGTATTCTGTTCAACTTATTTGACAAGTTGATTATATTAGAGTAATGACTATAAACATTTGAAATTGGCCGCAGTCTTATGTCTCTAACAACAGTTTTTATTTTGGTATATTATCTTCTAATTTTGTGTGAGTACTGTCTTAGTAATGTACTTAAGTATTTTAAGGAGGATTTTGTATGCTTGCTTTCCTTTTTTTAAAG
Seq C2 exon
GTATGTGTTGGGTGGAGGAGCACTTTGTATGGAACTTCTCACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-Ube2q2:NM_180600:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.2=100)
A:
NA
C2:
PF0017921=UQ_con=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: