MmuINT0172067 @ mm9
Intron Retention
Gene
ENSMUSG00000039046 | Usp6nl
Description
USP6 N-terminal like [Source:MGI Symbol;Acc:MGI:2138893]
Coordinates
chr2:6315519-6321365:+
Coord C1 exon
chr2:6315519-6315601
Coord A exon
chr2:6315602-6321325
Coord C2 exon
chr2:6321326-6321365
Length
5724 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTGTTGTTGTTCTCTGCAGTGA
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGGCGGGAAGGTGCAGAGATCGAGCCCTGGGAAGATGCTGATTATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACA
Seq A exon
GTAAGTCACACAGATTGAAAGCTGTCGTTTTTTTTTTTAGTTATAATCTTTCTTTGGTTATCTGTTATTACATTTAGTAGATTGTTTTTCTAAGATTCCAGGAGTGATCTAGTTTAACTTCCGTGGGTAAGATCGAGCTACGGTTAAGAATATAATCTGTACTGCCTTCGTGTTTTATAAAGCGCACAATCAGTGCATAAATGAGTTATATTAATAATTTAATAGTTAAGTGCACATGGATAACATTTATATTTTAAAAATATTATAAAACATTTAATTTTATATGGATGAATTTTTAAAATAACTAGCAATTAAAAAGTGAGTGTTGTGCAACCTAAAATTGAGCAATGAAAAAAATGCCAAATGAATCTTCCTTATACTTGTAAATGTAATCATGATATTGCTCCTCAAGATTAACTTTATCCGATGTTTTGTAGAGACTTGAGTGAGGTAGACTACTGGTAATTCAGCTAAAGATTTGACTCATAAAGCTATCACACAAACTAATGTCCATCGGGTGTTTTAGGTCCTAGAGCTGTGTGAATTGTGTGTTCATTTTGCTGCTAGCTGGCTTCCAGTGAGTGAGTGAGTCCATACTTCATCTAGAGGAGAGACTCAGAATTGCCTTGTGTGTTGTAAGTGTGCTGAGGCTTTGAAGAGCTCAGATGTGGGAGTATCTCACGAAGCTCTTTTTGTGTAGAGCTGGAGCCTGTGTGGAGCTGTCTGAGCCTTTGACCTTCCCTAGAGGACAGCAGAGCCTAGGATCCGGGCACTGTCCGCAACTCCCTGTCTTCCTTGTCTTTATTTCCTTTGTTTTCTTCCACCTCCCTCTCCTCCTCTCCCTCTTCCTCCTTTTTCTCTCCTTCTCCCTCCTCTTATCATTGAACTGCCACAACTGTGGTGAGAAGCCATGGACATTTATTGTAGTCAAGTACAGACCCGGGTTGAATCATGTTTTGAAGGATGACAATCAAGGATAAGGACTCTTAAGCCCAGTCGGTCACAGAGTCGGTCTGCACATTAGAAAAGCTGAAAAAAAGAAAGATGGGATGCAACTCAGTTCATTTTGACCATTCCATCCGTATAATTATGTGTTTTTAAGAATTATAGTGTAGTGCAAATAGTATGAAGTGCATTTAAAAAACCCTACTTTCCAAAAGGGTATATTAGTTGCCTAAACTTTCTTTCTTGTCAGTTGAAACAAATTTAAGTCTTATAGACAAGTTCTTGCCCAAGATCCAAACTTATATCTGTCAGTTAAAAAGTTGTAGTTTATTTTGTTTGTTGTTTAGTTTTGTTTTAATTTTAATTTTTTTTTTTCAAGTTTGGGCTGAGGTCTAGTTGGCTGTAGTGGGAGAAAGTCAGCCAATAACTTACCTTGATAGTCTTAGTCATTATCATTTGTAAATACTCAGTGCATGCCAGACACTGTTCTAAGCATTTACTTTCTCTGGGCTCTAGAGGGTGAGCCTGGAGCACTCACGTTGCCTTGAGTTGATTGACAGGTCAGCTCCTAGGACAGGGGTCTAGGGTAGGCCATGCTGCTACTGCTGTCTACTGTTGCCTTCTTTTGTTATAATGAAAGCGATACAGGCTGTGAAATGCCTGCACAGGAGACTGAAATGGCTGCTTCTATCAACATACTTACTAAGAGCAAAGTGAAACTGGCAGGTACCAGTTCTCATGACGTCACACTAGGTCTTAAAACTTTTTTTATACTGGAGTCCCGAAACAGAAGCAAAATGAAAACAGTGCTGGAGAGAAGAGGACTCCGGTGTGATAGATGCGCAGCTTTAGTAGCTGCTGTCTGTGTGTTACTGTGACTGCTTGTAGTAAAGCTTTCTCCAGTTGGCTGCTGATGGCTGTTACTGCTTGCCACAGCAGACAGGACTTTATCAGACCTTCGGATGAAGTTTTTGGTGTGAGATACTACTTTCTGCCATGCCTTGATCAAAAGAGCACTTCCTCTGTCTTAGCTATGTGTAAGGTTGGATTGCTACTGCAGTTGAGATTAGATTTTAAATTCCTTGTCAATGCAGTGCAATGCACAACCTCCCAGCCTTGCTGGGATGTGCTGAATACTCAGTGATATTAACTAAGATTGCTATGATATATAAAGGGGTGACAAAAGTTAGCACAGTGTAGGACTGACTTGATTTGATAACAGAGTTCACAATGAGCATAAAAGCTGTTGCCAAACCAGCTTGTGGTAGAGCTACAGCCGCACACTGGAAGAGTGGAGCTTGCTTCAGAGGTTGAATAAATGTTTAGCAAAAACTAGCTACCACAGTCTTCTGGACAAAAGAATGTCTGGTATTTGTGTAATGATAAATAATGTTTTTGGGTCACAAGTTTTTAATAGAAGAGAGCATTAAAAGGAAACTGTACCAAAAATAGAGGAAGTCAGATAACACCAAGCATCAGATGTTCACTACTTATCTAAATTTATGTGTTTATAAAAGGCAGTGGAGTCAGTCTATGTAGGTCTGTAAGAAGCAGTGAGTGAAGGTGCTCTTGCTTTCAACATTATCCATTTTGATTAGAAAGGTGGCAGAACTCTTACCAATATTATACACAGATTTTAACAAGGTTGACTCTAAACTTAAATAAAATTTGATTCAAAACCAAAAATGAACCATATCAATATATTCAACTTAACTGATTTTAACCATTTTAACAAACTGGGTTTCCAAGTGAATGTTTATTTGACATTTTAAAAAGATGCCACATTAACTGTTGGGAGGGCAGCCTCATACTCAGCAGTACATGGAAAGCCCAGTCCAGGGGGGAAGTATGCCAACCAAAGCATTTGTCTTCTTTCTGATGACTGCTGTCTTACTCAACCGTTAATAAGAAGGAGCAGCTTGTCTGTTGTAGAACGTATTTCATCTCTGTGGGGGGCTTCTATCCCACCTTTTATCATTCAGTTCCCAGATCAAAAACACACGACCTTTATATTTACAATAAGCCTTAATTAATCAGCACTAGAGCTGGGCAGATTATCTACCCTCTAAACTATTAGAATCTGCTCCCCATCAATAGCCCCAAATTACAACTTGCCATGCTCTATTTAGGCTGCTCTTAACTTAAGTTGGCCAGCCCTCATAGCCATGTTGTCATGACTTACCTAACCCACTGACCCTCGGGATCTTCTCCAGGGTACCTTCCCCAAACCCCATCTCCTGTCCAGCTATAGCTGTAGGTAGTTTTATTTGGGGTGGCAGGGTTACTTAGCATCAATCTGCAGTCTACCTGCAGATTCTCTCATCCCTGGGGGCAACCAGGCTTTGGGGGCCAGTGTTTAGCATTATAATACATAGCAAAAGACCAGACCTCAACACTTGTCAACTGCGTGTTGTCTCTAAGCAGTCCACATGTGCCTACTCAGTCTGTTTTACTTAAGCAAGGGATAGATAGTAGTCATTTGTTAGCAAGAGCCAGATACTAAATGGTTTTGCATTTGTGGACCATGTGTCTTTGTCACAGTGACTCCGCCCAGCTTGCTATAGGGGAAAACAACCCTAGACCCCAGCCAGTATCTAAATGAGTAAGAATGACAGTGTTCCAGTAAATCTTTCTTTAGGACACAGACAGCAAACGAGATTTGACCCATGACCCATGGTTTGCTCACCGGGAGGAGTACTCATCTCTGTGTTCTGACTGTGCTCTTTCCTTCTTTCTGCTCGAGGGAGATTTAGAGGTACGGACTATTAGAGCCACTGTGGTGGCACACACATTTAATCCCAGCACTTGGAAGGGAGAGACAGGCAGAGCTCTGGTATACAGAGAAAGTTCCAGGACATCCAGGGCTATGCAGAGAAGACTTGTCTTGGAAAAAAGAGGTGGTGGGGAGGAGAAAAAAAGAAAAGAAAAAGATACAGATTATCGGCATAAGCAGTCATGCCTTTTAGTACACATCTGTTTGACGTTCTCTGATCTCGGATGGCTGTGAGCCTCAGCATATGCCTGCACTGAGACCTGAGGACTAGGTCTGTAAAGATAAGTGTGTACACAACAGGTTCTGTTTGCGAAGTTGTAAGTATAAGCTATGAGAGGACCCACTCCTGTTGTCATCCATCTTTAAGGTCTGAAGACTGTATTCCATCCTTAGAATTTCTGTTATTCCTGAAACTGTGGTCTTGACCTCTGTCCTTTTTCTGTGTACACCCCAGCATAGCTAAATGGATGTAAATGCACTGGGTTATGTTGTAGAGAACATTTCTGTGTTAGGCTAAGTGACCAAATGAAAATGTTTATTTTCTTATCTGTGAAAAGAGGGATTTGAGTCTTCTCACTAAGTTCTCTTCTGGCTTTATACGACTTTTGTCAGTTTCATTGCTGTGACTAAATGGTTCATGTAAGGACTCTTCAGAGAAACAAAGAATGACATAGGACACACTAGGCTTGGGAATAACCTGTCATGTTCTTAAAAGCGGTGCCCCTTGATCTCAAGAGAAAACGGAAGCAAGAATATGCACATGCTGTTGCCAGAACAAACAAACTGTTGAGAGAGCTGCCGAGATCAGTTTTGTCTATACGCAGTGCTTCGTTTATTACTGACAGTTCATCTAAGAGTCTCAGGATACTTAACATTAAATTCACTAGCCCACTGGAAGCCAATTTTTCTTCTCTTTTCTCTTCTTTTCTTTTCTGATATTGGGAATTAAACCTAGGGCTCCACTCATGCCAGGCACATACCACACCCTACCACTGAGTTACACCTTCAGCATCTCTGTGTGAGGGATGCACACAGTCAGTCAAATATATGAGTCCATGTGTACACATGTTCACATGTGTGTATGCATGCATGTAGAAGCCAGAGGTAACCTTGGATGTTTCTCAGAAGCCATCATTTTTTTCCTTCTACAAGTGTAGGTTTCTCATTGGACCTTGTAATCCAGCCAGTTAGACTAGGCTGGCCGGCTGGCCGGCAGGCCAGTGAGCCCCAGAGATCTGCCTGTGCCTTCCCGGTGAATCTCCCATACCTTTGTGTGTGTTGGTTGCTAAGGATTGAACTCTGGTCCTCTTTCTTGTGTAGCAAGCACTTTACAAGCTGAGCCATCTCTTCTGGACTTCCAAACTCTGATTTTACATTTTTATTTCAAGACAGGGTCTCACTAAGTTGCCCATATAGGCTTTGAGCTCACTGACAACCCAGGCAGTTGTTGATTAGCTGGGGTTTTGGTCCTGGCCCTCCAGGCCTAGCTTCGGTTCTTTTCTTTATGTTAATGTTAGTGTCTAGTTTGCCACTTAGTTTGGTAGAAGTTGTGTGGAGCTCCCTTTACCTAATGTGTGAGGACTGGCATCCCAGTACAGTCGAGGTGGAGTAGCTATGAGAAAGGCTGTGATTCACGAAGCCTAAAACATTTACTGTTTGCTGTGACTGAACCCTGGTCTAGGATTGTTCAAAACAGAACTGGCTGCCATAATAGAAATGTTGAGTATGGCAGCCTCTTGATACATGACTTTTGTGTGGTCCGATTGTTGTAGTGAGACAGACTTTGAATTGTTCCCTGTAGGCTGGTGACCGCTGTGTTTAAGTGAGGCATGTTGCGACAATAGACCAGGTGGATTTTCTGTTGAATCTGGTGGAGTAGAAACGGGAAGCACACATCTCTCTAGAGTCAGGAATGACATAGGAAGAAATCCTGTCTCGGAAAAACAAAACAAAACAAAACAAAGCTCTGATCTCAACCATTCCGTGTTTGTTGTTGTTCTCTGCAG
Seq C2 exon
TGAGGAGGAGCTCCCATACCATAATGCAGCTGCGGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039046-Usp6nl:NM_001080548:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: