MmuINT0177537 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137403621-137405482:-
Coord C1 exon
chr5:137405265-137405482
Coord A exon
chr5:137403811-137405264
Coord C2 exon
chr5:137403621-137403810
Length
1454 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTTTCCTGTGACTTCCACAGGCA
3' ss Score
11.05
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCAGCTCACAGCCACTTCACCAGCTGCCTTCCCTCCTGTCCACCTTCCTGTGCCAACCTGGATGGCAGCTGTGAGCAGACCAGCCCCAAAGTCCCTTCCACCTGCAAGGAGGGCTGCCTCTGTCAACCTGGCTACTTCTTGAATAATGGCAAGTGTGTGCTCCAAACTCACTGCGACTGCAAAGATGCTGAGGGTGGCCTTGTTCCG
Seq A exon
GTGAGTGGGTGCGGGAAGCGGGGAAGATGGCTTGGTGACCAAGTGCTTGCTGTGCAAGGGCAAGGCTCCAAGTTTAAATCCCAGGTGCCCACATTAAGCTGGGCTTGGAATCCCCAGAAGCTGGCAAGGTGGCTGGCCAGGTGTTCACTGGGAAGACTAGCAACAATGAAACAAGAGACGAGGAGACCCCGTCTCAGTACAAGCTGGAGAAAGTGAGACCCAATCAACACTCTGACTGCTTCTCCTCTACTTAAACTGCTCTATCTCCTGGCTCTGTCTTCAGGTGGAGGCATGCAGGGCTCTGCATCCACCTAAGAGCTCTGCATTCAAGAATGGAACACACACACACACACACACACACACACACACACACACACACACACCAGATTATTTTTAATATGCCTTACCTAGCTCAATGGCTGGGCACTTCCAACCCTCTCCATCCTACCACCACCCCACCCCGTCCCCACAGCTAATACACTGCCCTTCAATATTCCTGAGTTAACCCTTTCTAAATCTATATTTTATCTTTACTGCCCCCCCCCCTGTTCCTTCTGGACAGCCCTCCCATGGGGCCGCTTTCCCTTTGCACCAATATTTTGGTCATCTCACCCCCCTGCTCTTTCATTACATGGTCCGTCCTATGCCCCTCTCATGGCGGACCTCAATTCTCTTCTCCTGCCTTTTGCCTTGGAATCCTTAAATTCCCTCCTCTCTCTCCCTTCCCAGCTATTGGCCAATGACAACTTTATTTCCCAATCAAAGCCAACTAGGGACAGGCTTCCTTTAACCTAAATGCAGAGTACATAATTAGCATAGGCACACAAGCTGCTACATAATTAATTTTTAAGTAAAGATTACGTTTTACAAAGCTAGGAGCCAAGGAATGGCTCCAAAAGGACACTTGCTCTCAAGCCTGAACACCCAAGTTTGATCAGCAAGACCCACATGGTGGAAGGAAAGAACTGGCTCACACAAGTTGTCCTCTGACCTCATGTGTCTTGGCTTGCGTCTCTGGCTGGCCCTTGAGTTTGAAACTTGGTCAGGGCCTGGCACTTGCTGGGCAAGAACTCTACAACTGAGCCATGTACCTGGCCTCTCAATAATGACTGTGCAAGTTAGCTGTGACTAAGCCTTGCTTAGAATCCCTTCTGAGCATTGTAGGCCTGTGTTCTACCACTGAGCCACGCCCAGCCCCTCACTGTGGGTATTCTAGGCAGGAGCTCTCCCACTGAGACATATTACTAGTCTCTCACTGGGGGATTCTACATGGATATTCTACCACGGAGCTAACTCATTTGCCCTAGATATAGTCTTTTTTTTTCAGTATTTTCCATCTCTAGCTGTTTGACTCAATTGTTGTAAAACCTGTAGACAGAGGGCAAATGCAACTACTTTCGACAGGAGGTGAGTCTGTCTCTCTAGGACACTCTCTTTTCCTGTGACTTCCACAG
Seq C2 exon
GCAGGCAAGACCTGGACCTCCAAGGACTGTACCCAGAGCTGTGCCTGCACAGGAGGGGCTGTTCAGTGCCAGAATTTCCAGTGTCCCTTGGGGACTTACTGCAAAGACAGTGGTGACGGCAGCAGCAACTGCACCAAAATCCATAAGGGAGCCATGGGGGACGGTGTGCTCATGGCTGGAGGGATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
NA
C2:
PF127142=TILa=PD(78.6=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGTGCCAACCTGGATG
R:
TCTGATCCCTCCAGCCATGAG
Band lengths:
353-1807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types