MmuINT0178665 @ mm9
Intron Retention
Gene
ENSMUSG00000050954 | Zfp169
Description
zinc finger protein 169 [Source:MGI Symbol;Acc:MGI:1915161]
Coordinates
chr13:48602276-48608805:-
Coord C1 exon
chr13:48608664-48608805
Coord A exon
chr13:48602363-48608663
Coord C2 exon
chr13:48602276-48602362
Length
6301 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTCT
5' ss Score
2.68
3' ss Seq
CTTTTCTTCTTGTTCCTCAGATT
3' ss Score
11.37
Exon sequences
Seq C1 exon
GCATCCTGCAGTCGTCACCTGTGCCTGTGGACGATTCTACTGCGGTTCTGGTGAGCGAAAGTGCAGACGTCCTCGGCTCTTGCAGATCCCTCCAGGCGGGGAAGAGTCCGGAGAGCTGGCGTGGGCCACCCACAAGGTTCAG
Seq A exon
GTGTCTGCCGCTGCTCCATCCTCGATGCGTGGAGTCTTTGGGAGTGGAATCAGCTTCTCTGCCCATCCCGGAGGAGGGTCTCGGTGAAGACCCTGGGATGGGGAGGGGGCCATGTGAGAACGGGGTTAGGGGTCCACTATCTTGTCCTAAACAAGCTACAGGTCAGTCTGGCCTGCTTCCCAGGCTATGACGCTGTAGGTGTGTCCCCTGTGTTAGTGCCAGGTCAGGGAGATTGGACCTGGGGCATCTAGATGTCACCTTTCCACCCCCGCTCTCTGTTGAGGTTTGTGAGGGATCAGAGCCATCCTCCACAGGAACAAATGTCTGAATTGGTGAGGACAGAAGTCTTGGGGAGCTGCACTCATCATGAATTTGGAAATACAGCTTGGTCGCTTGCCTTGCGGGGAAAACATACAGAATTGCCTGGCTGAATGCAACGGCAAAGACCAAGAGACTAGAGCTAGTCTTGAAGTTTGGAGTCTTGGTGTGTGACAAGGCTTGTGTGTGTGGTGTGTATGTGTGTGCGCGTGCGTGCCTGTGTGTATATGTGTGTAGGGGGGAGTGGGGGTGGCCTTTTTACACATTGTGGGCTAATGACCTTGTGTGGCTCCCTTGAGCTCTGGGATCTTCCAAGAGCCTGGAGTGATGTAATGGGAAGAGACATTTCCCCCATGACCCAGGGCTTGTTGGCTCCCTGAATTTCTGGCGGTGTAGCCTGGTTTCTCCTTTTCTCTTTAGTTCTCTGATCTATATATACAACTCATTTTGATTATATTCACCACTGAAAATTCTGTCCCCAGTCCACCTATCTTTGTGACCTATCTTTCTTTTTTGTTTCAAAACCCTTTAAGACTAACTTATGCTGAATTCAATATTCTTGAATATTTCATTGGATTGTTATTGGCTTACCTCGGGCTATATACTCTTAGAGAAACCCTTCTCCTCCTCTCCCAGCAGCTAGTAATTGCCGTAGCTTGGTACTAGGTATTTGGTGCCGAACTCTTGTCTCTGTGCTGAGATTTGTTCTGGTTTGGGCTTGCACGGGTCTTGTGCATGGTGTTGTAACTGCAGTGAGCTTGTATGTACAGTTGCCCTATTGTCTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATCACAGAGAAAGACGCTTCAGTTGGGAAGTGCCTTCATGAGATCCAGCTGTGGGGCATTTTTTTGGTTGATGATCAAGGGGGGAGGGCCTATTGTGGGTGGTGCCATCTCTGGGCTGGTAGTCTTGGGTTCTAGAAGAGAGCAAGTTGAGCAAGCCAGGGGAAGCAAGCCAGTAAGAAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGATCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAAGTGTAAGCTGAATAAACCCTTTCCTCTCCAACTTGCTTATTGGTCATATTTGTGCAGGAATACAAACCCTGACTAAGACACATTGGTACCAGGAATGGGGTATTCTTGTGACAACCTGATGATGTTTTGGGGAGGACTGTGGAAGGACTTTGGAACTTTGGGCTAGAAGATCCATTCGGTATTAAGAGCTCTGTGGGATGTTGTATAGGAGCTTGGAAGATAATGTTGAGAACAGTGCACAAGATGGAGGCCTGGCTTGTGAAATTTCAGAGGGAAGACTAAAGACTCTTATCAGTGCCGCTGCTATTTTTATTGTGAAGATTCTGTGGTTTTGGTTAGCTGGGGCTGAAGAATCTGCTGTAAATAACAAGATACCAGAACTACTAAAGTGAAAACTTTGCATTACTGGGACTATTGATGCTGGTGAGCTGGAGCTAAGAAATTGAGATGGCTCAGGGGGTAAGAGCACTGACTGCTCTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTTACAACCACCCGCAATGAGATCTGACACCGTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATTTATAATAATAAATAAATCTTTGGCCAGATCGAGTGGGCTTGACCTGAGTGAGCAGAAATCTTAAATTCAATTCCCAATAACCAGATGAAGGCTCACAACTATCTGTACAGCTACAGTGTGTACTCATACACATAAAATAAATAAATAAATCTTAAAAAAAAAAAGAAAGAGAAAAAGAAGTTAGTGGTGATAAGAAGAGACCAGCATCACTGAGGTGAAATCTTCTGGGAAGTGTTTTCTGAGAGCACAGAGGCTGTGTTCGAGAGATAGCCAAGGTTGTACCTTGTGCTGTGGCTGGACTTTGTAATGTGTAAGAGTCACTCAGGTTTTGAAGGCATGAAGGGGTCATGAAGAGCAGCTGAGGCTCTACACTGTGAGAGACCATAGAAGGCCATTGGTGAAGGTGCAGCCTCAGTTGCAATTGATGGCCCAGGACTGAAGGGGTCATGCAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATGAGAGGCTATTGGTGAAGCCTAGTTACAGTGGGAGATAGCAGTGTTTTGGAGATGTCAGTACCATGAGATGACCATTGAGAACAGCAGCAGCAGTGCAGTACAGGCAGCTGGAGCTTAGAAGACAAGGAGTCTGCTACAAAGGGCAGAACTGGACAAGTGACCCAAGCCCTTGGAGGAGCCCAGAACATCATGAGTTGGATCCCAGACATTGGATGGTTGGAATTTGATTTTGCTTTTGATTGTGACTGTGCCCTGATATTTTTCCTTCTTGAAGTAGTTATTTTAGTGGAGCCCACAGTTAAGAGACTTTGAATTTTAAAAGACTTTGAATTTTAAAAGATATTGGATATTTTAAAGGGATTGAACTTTTAATATGCAAAGACTGTGGGGCTTTTAATGTTATTTAGATCTTGGGGATGAATAAGAAATTAAGGGTTGAGGCTTAATAGTGATGTGTTTGTGTGTCAAGTTGACAAGGGGTCAATTGTACTGACTTGACAGTTTTGTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCCAGCTGTGGGGCATTTTTTTGGTTGATGATCAAGGGACCCATTGTGGGTGGTGCCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAAAGCGAGCTGAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGAGATGAACAGCAATGTGCAAAGTGTGAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTTATGATGTTTGTGCAGGAATAGAAACCTAACTAAGATATGGTCTGAAGATGTTGTTTCCTTGGAGTAATCCACCACCTCTGGCTCTTACAACCTCTTTGCTACCTGAGCCTTGGCTGGGGTTTTGTGGTATATATGTTTTTGTTATGGCTGAGATGTCTGCAGTTTTTTGTTTTCTACACCTTGGCCAGCTGTGGGTCTCTGTGTTTAATCATCATCTATGCAAAATGGAAGTGTCATAAATGAGGATGGAGAGAGATGCATTAACTATGGGTAACCCAAGAAATCATTACAGATTGGCTTAATACTATATCCATTTATCCGTGTAGTGGTAGTAGGTTCTTTTCCAGGAGCTATTGCATGTCTAGATAGGTTCTGACCTATCTGCATATCTTGCCAGGCTAGTCATTATTATAGTTTGCAGGGCTCATAGCCAGGTCCAATTGGTGATTTTTTTTTTTTTTTTACCCTGGTAGCAAGCACAGCACCTTTTAGCAGTTGGAAGCTAGCCAGAAGTGACGAAGCTTCCAAGCCAGTACCAGCTTGATCCCCTCATGTCCTTTGGCTCAAATATGTGGTGTCTTCAGCAAATAGGGTCTTACTATCAAGTTTTGGAGAGTAACAAGAGCATGGACAATAGCTTGTAATGTTTGGGGCGGATCTTCTGGGCCTCGGTGGCCAACAACTCCAAAAGAGGTAAACCCGTTCCTAGCAATGGACTTTTAAATTATTAGTCTCTGGTGTCTAGTGTGTGGGGGTGTTATTGTTACAGGGTAACTGCATTTTAACCCCCCTCTCTTTCTGTGTATGTTGGGGCTTCTATGGTAGTAGGTTTCCACATATCCTTTTCAGAAAGGTCTTTAGTGTTATGTATCCCTCTCTCAGGACTTAGAATTTTGAACTTTACCGTGTGGAAACATTGCAGTCGTTCCCAGAAGTATGACAGCTCTGAATTTCTATGGATCCACAACCTCGATTTATCACTTGCAAGTGGGTGAACTGCCTTGCACCCAGTCCTCATCTTGAAGTGTGGGTTTCTTTGGAGTCGGCTCCTTTCTGGGGGCCTATGCCAGAGCCTGTCTGTGAGTGAATCCAGCTGCCCCTGCACCTCCGGGGCAAGGAGCAGTTCTGGTTTGTGTCTTCACTGGGTCAGTTTGAACTGGGCTATTGCAGAATACTATGCCCTGACATAAAAGTCACCGTCTTCATCAGGACAGTTCAGACTACTTGGGACAAGGTTCATTTGACTCCGTTTGTGTGGCTACGTTTCTAAGTTTGCTCTCCATCGTCACTTCGCAGCCCCAATACTCCATGGCCTTGATTACTGCTGCTTTGTAAGTTGTGCTCTCTGGCAGCATCTGGGTTTGTTCTTCAGGATTGTAGTAACTCTCTTGTGTCCTTTGTCCTTTCATATGGATTGGTGATTTTTAAAAAAATACCTATGAAGTAATTCCCTGAAATTTTGATGGGAAGGTGTTTGTATCTGGAACCCAGGAGAAGTGGCACCTTCACAGTGCTGTTTCCTCCTTTTCCTCCTCTTCTTCCTCTTCCTCCTCCTCCTTCTTCTGTATATGTCTTTGCTGATTTAGACCTTTCATTTCTGTGAGTACACTGTCACTGTTTTCAGACACACCAAAAGAGGGCATCGAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAGGAGCAGGCAGTGCTCTTGGCCCCTGAGTCATCTCTCCAGACTAGACCTCTCATTTCTTTCAACAAGATTTTGTAGTTTTCCTTATAGCCATCTCATGATTAAATAAATTATACTTAGTATTTCTTTGGATGTTATTGTATTGTACTGGTTTGATCACAAATTCTAGTGGTTCATTGCTAATGTATAGAAAGTAATATTTTATGATTAACTTTGTATCTACTAGTTTAAATAACTTGCTTTAGGAGTTTTTGTTGATTTTTGTGGGATTTCTCTTCAGAGTCATGCCATCTATAGACCAAGTCAGAGTTCTTTCTTTCACTGACTTCTTACTGTATGTCTCTATAAGGTTTACATGTTACGTTTGATTGACATGCGTTTAAGTACCTTTTTATTCCACAAGAGCTTCCATCCCTATATATTTTAATACTTTTATCTGTCGCGGGCATCATATTTAACAATATTTATTAGTATCAATTCATCATTCAGTACTTTTGCTTTGCTTTTTACTAATGACTGTCATTTTCCTCCATATCCCCAAAGGACATGATTACAGCTAACGATAGTTACAATTTTCTAACATTGTCTCATGCCCCATTCATATTTAACTCTCTTTAGTGGTCTTCTCTCATTCATGTGTGTAAGCCAGGATCTGGGCCAGGTCACATATAGCATGTGAGCAATGATTTTCTCCTATCTGTAATTAAGAGAAGATCTCCCTCTACTTCTTCCTTAAACAAACTGTTTATGAGGCTGACTTTGTATAGAATGGGGCAAGCGCTGCCGATGACCTAAATTCCAAGTGACATTTCAACCCTTGGGAGCCTCATCTTGGCTTTGTGAGTGGGTGTAGCCAGGTCATGTGAGAAGAGACCAGGCCTCTTCTCAGCTCCAGTTCTCGCTCAGATCTTCACTTTGGAATTCTCCTGCGCTGTCCTTTAGCCTCTAGGCTGGTATGGATGGGATTCTTCTGTCTGCCGTGTGCCAGGGAGCTTTCTCTTTCCCTGTGAGTGCGTGCTTGCTGATGGACACTCTGAGTTTTACCCAGCTGTTGGAGAATGGAGGCTCTGTATCTCAGCCAGAGATGAGGCTTGACCTGGTGACTGGCTCAGATCTGCGGGTTCTCTTTACTGGTTACATGGGCTGTAGAGATGCTTGCTTTCTGTCAACCTACCTACCTCACCTCTACCATGTCCCTAACTTTCTGCTCAGTCAGGAGACTGGGGCATGTCCAGTCTCCTTTCTAAGTGTTCTTGCTTTTCTTCTTGTTCCTCAG
Seq C2 exon
ATTGGACTCTGAAAGCAGACTCCTCTCCAGGGAGAATATTCTGGAACGTGGGAAATGGCCCCAGGGCTCCTGACAACCAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050954-Zfp169:NM_001164576:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: