MmuINT0178682 @ mm9
Intron Retention
Gene
ENSMUSG00000006720 | Zfp184
Description
zinc finger protein 184 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1922244]
Coordinates
chr13:22041529-22042198:+
Coord C1 exon
chr13:22041529-22041655
Coord A exon
chr13:22041656-22042102
Coord C2 exon
chr13:22042103-22042198
Length
447 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTTTCCTCCCTCTGAGCAGGGC
3' ss Score
8.62
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACCTGGATCCTATACAGAGAGATTTGTTCAGAGATGTGACACTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
GTGAGTGTGGTGCCCTCCCCCCAAGTTAAAATCAGGATGTAGGAAGAGGGTACACACCTGGTCTCTAGCGAAGGGTGACCTTAAGTTTGTTTGGTTTTGGTTTATATGGTGTGGCAAACACACACCTTGTCTTTTTAGGTGAGGATAGCTCCAAGTTTAGATGGGATGTGGGAGGCACGTTATTGTGCTTAGATGTGATTGGCATCTAAATTTCGGGACCAGACATTTTAAATTTTAGAAGTTTCTCCTCATTATTAAGTGGAGTATTCTCCTCTCCTTAGATGAGCTTCTCGGTTGCCCCATTGTTAGGACACTGGACATGCTGGCCATCACACAGACTTTTCCCATGTGGAGTATCTTAGAGATAGTGGAGTGGTGAGATTGCGTTCTGATGTGGTACTTTTTCCTTATTGCAGACAGATTCCTTTTTTTCCTCCCTCTGAGCAG
Seq C2 exon
GGCTCCAGGTTTCCAAACCTGATATGATTTCCCAACTAGAGCAAGGGACAGAGCCATGGACTGAGGATTCGTGCATTCCTGTCGGTCCCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006720-Zfp184:NM_183014:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGTGACCTTCAAGGATGTGG
R:
CTTCCAAGGGACCGACAGGAA
Band lengths:
222-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: