MmuINT0178682 @ mm10
Intron Retention
Gene
ENSMUSG00000006720 | Zfp184
Description
zinc finger protein 184 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1922244]
Coordinates
chr13:21949660-21950329:+
Coord C1 exon
chr13:21949660-21949786
Coord A exon
chr13:21949787-21950202
Coord C2 exon
chr13:21950203-21950329
Length
416 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GTACTTTTTCCTTATTGCAGACA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACCTGGATCCTATACAGAGAGATTTGTTCAGAGATGTGACACTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
GTGAGTGTGGTGCCCTCCCCCCAAGTTAAAATCAGGATGTAGGAAGAGGGTACACACCTGGTCTCTAGCGAAGGGTGACCTTAAGTTTGTTTGGTTTTGGTTTATATGGTGTGGCAAACACACACCTTGTCTTTTTAGGTGAGGATAGCTCCAAGTTTAGATGGGATGTGGGAGGCACGTTATTGTGCTTAGATGTGATTGGCATCTAAATTTCGGGACCAGACATTTTAAATTTTAGAAGTTTCTCCTCATTATTAAGTGGAGTATTCTCCTCTCCTTAGATGAGCTTCTCGGTTGCCCCATTGTTAGGACACTGGACATGCTGGCCATCACACAGACTTTTCCCATGTGGAGTATCTTAGAGATAGTGGAGTGGTGAGATTGCGTTCTGATGTGGTACTTTTTCCTTATTGCAG
Seq C2 exon
ACAGATTCCTTTTTTTCCTCCCTCTGAGCAGGGCTCCAGGTTTCCAAACCTGATATGATTTCCCAACTAGAGCAAGGGACAGAGCCATGGACTGAGGATTCGTGCATTCCTGTCGGTCCCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006720:ENSMUST00000176580:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.358
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGTGACCTTCAAGGATGTG
R:
CTTCCAAGGGACCGACAGGAA
Band lengths:
254-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types