BtaINT0164980 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011498 | ZNF184
Description
Bos taurus zinc finger protein 184 (ZNF184), mRNA. [Source:RefSeq mRNA;Acc:NM_001100372]
Coordinates
chr23:30973288-30974072:+
Coord C1 exon
chr23:30973288-30973414
Coord A exon
chr23:30973415-30973976
Coord C2 exon
chr23:30973977-30974072
Length
562 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTTTTATTCCAATGCATAGGAC
3' ss Score
6.4
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGATCCCGTACAGAGAGGTTTATTCAGGGATGTGACATTGGAGAATTATACACATCTGGTCTCTATAG
Seq A exon
GTAAGGATGACTTTTCTGAGTTAATATCTGGAGGTGTGGAGGAGGAGGGAACTCATGTACTTAGGTGAGTTTTTTCCTTTCAGTTAAGGAACCAAAAACTTCTTTGAAAGGTTTTGAAAAGGTTTCTGCTCTCTAGTAGCCTTCCTTCATAGTTCAGTTGGTAAAGAATCTGCCTACAATGCGGGAGACCTGGGTTTGATCCCTGGGTTAGGAAGATCCCCTGGAGAAGGGAAAGGCTACCTACTCCAGTATTCTGGCCTGGAGAATTCCATTGACTGTATGGTCCATGGGGTCACAAAGAGTCAGACACGACTGAGTGGCTTTCACTTTCACTCTCTAGTAAGTAGAAGGACAAACTAATAATTTTTCTAAAGCCAGATCAGTTTCCAAGTTATACCACATTTGGGAACGTATAACATCAAAGCTTTGTATATGTCTTCCTTCCATCTGATTTGTCCACCTCTCCTTTCCTCTAAAGACAAAGCGATGAGAATGAACTCTGAGAAGGCACTTTTCTCTCACTGCAGAAAGGTAACTTTTTTTTTTTTATTCCAATGCATAG
Seq C2 exon
GACTCCAAGTTTCCAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCGTGGATTGTGGAGCCCAGCATCCCAGTAGGGACCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011498:ENSBTAT00000015283:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGTGACCTTCAAGGATGTGA
R:
CTCCAGGGGTCCCTACTGG
Band lengths:
222-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]