MmuINT0179542 @ mm10
Intron Retention
Gene
ENSMUSG00000030386 | Zfp606
Description
zinc finger protein 606 [Source:MGI Symbol;Acc:MGI:1914620]
Coordinates
chr7:12489570-12490044:+
Coord C1 exon
chr7:12489570-12489696
Coord A exon
chr7:12489697-12489948
Coord C2 exon
chr7:12489949-12490044
Length
252 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTCTTCCCTCCATATGTAGGGA
3' ss Score
9.95
Exon sequences
Seq C1 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGGACAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTGGAGACCTATGGACACCTACTTTCTGTGG
Seq A exon
GTAAGGTGAAAACTGACAAAGCCATTTCCTCCACAGTGTCTTCAGCTATCCTGTGAAAGAAGTATGTTGTATCTCTGAGGGGCTAAGATTATCTTGAACTTTGAAATTCAGGGATGAAATTCCTAATGTTTATGAAAGTATGAAAGGAGAAGGCTGTGTATATTCTGCATGAGGAAGACTAGGCAAGGGAAGATTTCCTTGGCAACTCCATAACTTTCTCACCAAAGTCACATGTCTTCCCTCCATATGTAG
Seq C2 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGGAGAAGAGCCATGGTCAGTGGAGCAAGGATATCCTAAAAGCAGTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030386:ENSMUST00000098822:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGACTTTCAAAGATGTGGC
R:
CTGGACAACTGCTTTTAGGATATCC
Band lengths:
220-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types