BtaINT0165788 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003456 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:HGNC:25879]
Coordinates
chr18:65653541-65653994:-
Coord C1 exon
chr18:65653868-65653994
Coord A exon
chr18:65653640-65653867
Coord C2 exon
chr18:65653541-65653639
Length
228 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TGTTTTTCCTCTTCATGTAGGGA
3' ss Score
9.32
Exon sequences
Seq C1 exon
GAACCAGTGACCTTCAATGATGTGGCTGTGGACTTCACACAAGAGGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGACGTGATGCTGGAGACCTATGGGCACCTGCTCTCTGTAG
Seq A exon
GTAAGCTGCTGGCTGGCTGAATAAATGAAGCTGTCCTTGCAATACCCTCTGCTGCTCCCTGTTTACCATCTTACATGAGCCTCAGGAGGGCCGAGGTGATCATGAGCCCTGAGGTTCAAGGATGGAGTCCCTACTGATCATAAAGTATGAAGTGAAGTCACTCGTGGAAAGAGTAGGGGAAGGAGGGTTACATGACTACACAAGTCCATGTTTTTCCTCTTCATGTAG
Seq C2 exon
GGAATCAGATCACCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCATGGTCAATGGAACCAGCATATCCTCTTCAAGGCACTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003456:ENSBTAT00000004486:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.176
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACCTTCAATGATGTGGCT
R:
CTGGACAAGTGCCTTGAAGAG
Band lengths:
221-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development