RnoINT0168445 @ rn6
Intron Retention
Gene
ENSRNOG00000019127 | Zfp606
Description
zinc finger protein 606 [Source:RGD Symbol;Acc:1309810]
Coordinates
chr1:66237010-66237489:-
Coord C1 exon
chr1:66237363-66237489
Coord A exon
chr1:66237103-66237362
Coord C2 exon
chr1:66237010-66237102
Length
260 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGTCTTTCCTCCGTGTGTAGGGA
3' ss Score
10.49
Exon sequences
Seq C1 exon
GAACCAGTGACTTTCAAAGATGTGGCTGTGGCCTTTACCCAAGAAGAATGGGAGCAGCTAGACCTTGTTCAGCGGACTCTGTACCGTGATGTGATGCTAGAGACTTATGGACACCTACTTTCTGTGG
Seq A exon
GTAAGGTGGAAACTGAGAAAACCATTTCCTCCACAGTGTCTTCAGCTATTCTGAGAAAGAAGTATGTTGTATCTCTGAAGGGCTAAGATTATCTTGAGCTTTGAAATTCAGGGATGGAATGCCTAATATTTATGAAGTATGAAAGAAGGATGTGCATATTCTGTGTAACGAGGAGTTACAGTGGGACTAGGCAAGGGAAGATTTCTTTAGCAACTCCAAAGCTTTGTCACCAAAGTCACATGTCTTTCCTCCGTGTGTAG
Seq C2 exon
GGAATCAGATTGCTAAGCCTGAAGTCATCTCCCTTTTGGAACAAGAAGAGCCATGGTCACTGGAGCAAGGATATCCTAAGAGCAGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019127:ENSRNOT00000025981:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGTGACTTTCAAAGATGTGG
R:
CTGGACAGCTGCTCTTAGGAT
Band lengths:
220-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]