HsaINT0187820 @ hg19
Intron Retention
Gene
ENSG00000166704 | ZNF606
Description
zinc finger protein 606 [Source:HGNC Symbol;Acc:25879]
Coordinates
chr19:58499575-58500089:-
Coord C1 exon
chr19:58499963-58500089
Coord A exon
chr19:58499671-58499962
Coord C2 exon
chr19:58499575-58499670
Length
292 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGCTTTTCCTCCATGCATAGGAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GAACCAGTGACCTTCAAGGACGTGGCCGTGGACTTCACCCAAGAAGAGTGGGGGCAGCTGGACCTTGTTCAGAGGACCCTGTACCGTGATGTGATGCTGGAGACCTATGGTCACCTGCTCTCTGTGG
Seq A exon
GTAAGGCAGGTGCTGCCCAAGTAAACGAAGCTGTTCCCATGGTAATGCCTTCAGCTGCTCCATGTTTAGAAGCTCATTGCAGGGGCGAGGGTGGTGTCTCAGAAGAGCTGAGATGATCTTGGGCCCTGAGGTTCAGGGATGAAACTCCTAATGCTTAAAGAGCATGGAGTGGGAAGGACCTTGCATATTCTGCCCAGGTTGAGAAGTCACAGGGAGGAATAGGCAAGAGAAGCTTTCTTTGGCTGTCCTGAAGCCTCATGACATGATTTCCATGCTTTTCCTCCATGCATAG
Seq C2 exon
GAAATCAGATTGCCAAGCCTGAGGTCATCTCCCTGTTGGAGCAAGGAGAAGAGCCGTGGTCAGTGGAGCAGGCATGTCCTCAACGCACTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166704-ZNF606:NM_025027:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGACCTTCAAGGACGTG
R:
CTGGACAAGTGCGTTGAGGAC
Band lengths:
220-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)