HsaINT0186345 @ hg38
Intron Retention
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27456826-27457409:-
Coord C1 exon
chr6:27457283-27457409
Coord A exon
chr6:27456922-27457282
Coord C2 exon
chr6:27456826-27456921
Length
361 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTTTTTCCCTAATGAACAGGAC
3' ss Score
8.17
Exon sequences
Seq C1 exon
GAAGCGGTGACTTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGACCCTGGCCAGAGAGATTTGTTCAGGGATGTGACATTGGAAAATTATACACACCTGGTCTCTATAG
Seq A exon
GTAAGGATAATTTCTCTGAGTTAATATCAAGGGGTGTGCAGGAGGAGGGTTCTCTCTTGTGCTCAGGGGAGTTTGCCTTTAAGTTTAGTAACCAACCATTTCTAAATTTCTAGTTTTTGAAAAGGTTTCTACCATCCTAGCAAGCAGAGGGACAAAATAATAATTTTCCTGAACCCCGATCAGTTCCCAAATTATACTCCCACCATGTCTGGGAACTGGTAACACTAAAGCTTGATATGCTATCCACTCCCATCAGGTTTTTACTACATATCATTTCTTCTAAAGACAAAGTGGTGATTGAATTCTGATATGGTACTTTCCCCTTACTGCAGGTTTCTTTCTTTTTTTCCCTAATGAACAG
Seq C2 exon
GACTCCAAGTTTCTAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCATGGATCATGGAGCCAAGCATTCCAGTAGGTACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654:ENST00000377419:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.313
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGTGACTTTCAAGGATGT
R:
CTGCACAGGTACCTACTGGAA
Band lengths:
222-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains