Special

MmuINT0178709 @ mm9

Intron Retention

Gene
ENSMUSG00000051469 | Zfp191
Description
zinc finger protein 191 [Source:MGI Symbol;Acc:MGI:1929704]
Coordinates
chr18:24170768-24175932:-
Coord C1 exon
chr18:24175785-24175932
Coord A exon
chr18:24173187-24175784
Coord C2 exon
chr18:24170768-24173186
Length
2598 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTACATTTTCTCTGTTTCAGATG
3' ss Score
12.65
Exon sequences
Seq C1 exon
GTTTCTCTCCGTCGGCAGAAACGGGAAGTGCTTGTAGAAGAGATAACATCTCAAGAAGATGCTCAGGGATTACCGAGTTCTGAGCTGGATGCTGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTG
Seq A exon
GTGAGGACCAGGGCACCGTGTGGTGTGGCCTTTCCCCAGAGTGCTTTGCTTGTTCTTGTGGCAAAATCCTTTTAATCAGAAATTCCTATGCATTAAGAGCTTGACTTTTTCTGATGATTGATTCATTGGCCTTAGGTATTTTTTGCTCCCAGACATTACCATCGTTAGCTTTTTTGCAGTCTTCTTCATGAAGACCTGCCTATCTTGGGCTCACATCTGCATTTCTCAGCCAGTACCTGGAGACCAAGTCTGTTTTGGTGATGGGATTGCTTAGCTGCTGTCTGCTAATGCCCTTTGCTTTCAGTTTCCTGCCTAACTGTATTGACATGGTGAATTTATCTGAAACCTCCTTCAGCCTTTTTGTTTATTGTATCACCAAAGTTTTCCTAAAATTCCAGGAAATTTTAATTCTAATTAAATTTTAAAATTTAATTTAAATTTAAATTTTATTTTTGTTTTTTTCCTTCAATATTCTATCTAGAGCCTTTTAAGAAACTTTCTTTTTCTCCTTTTTATTTTATGTGTATGGGTATTTGCCTTCATGTGTGTCTATGTAGCATGTGCTTATTGGGTGCCCTTGGAAGTCAGAAGATGCTGTCTAATCTCCTGGAGCTGGAGTTACAGATGGTTGTGAGCTTCCTTGTGGGTGCTGGAAATTAAACCTGGGTCCTCTGGAAGAGTAGCCAGTGCTCAACCACTGAACATCTCTCCAGCCCCCTTAAGAAACTTAAAAAACATTATCTGTCTTTTAAAACTTACATGTAACTTGAGTACAAGTGTGTGCATGTAAGTGCAGGCACTGTCAGGTCAGGAGAGAGCCTTGCAGTACTGGTACTAATGCCATGCACTTGTCTATAAGACCAAGTATACTAAACTTACTGTGCTGCAGTTGGTTTCTGTGACATTTTGTTTGAGATTGTTTCAGGAGTCAGTCCTTGAGGTAGGTGGAAATTAATACTAGCATGCCATAAATTAAGATATGAGCAGTGTTCTTCCCCGTAGGAGTGGGGCTACAAGTCAGAACTGGGGTACAGGTGTAATCTGCCACACTGGTTTTACCTATCATGGGAGCGCGTTCTGTTGCCTAGTTTAGGAACTGTACTTGTCCTTTCAAGATATGCTTTCATGGGTAGAAAACATGTCCTCTTCCTAAATGTCAGAATTGTCTGTTGGCCTCATTTTAGCAAACAAGTAGCTTTCCCATCCACAACATTCCGTTTATTCCAGGTCATATGTCCATCTACCCTTCATACTTGACTTTTCAAGTATGTAGGCCTCATGGCCCCTCAGGCCCTTGGATCTCCCTCTCTTCTGCTTTCTCGATTGACTAACCTTGCTATCACTTATCCCGGGCTGCTTTTGAGTGCTCCTGCTCACTGTGTGACAACTGTCTACTCTGTACTGCTTAAAGTTCCAGAAACATGTTGGTTCTTATCCCTGCCTGCGGGTAGACAGTGCTGCCACTTAAAATATTGAGGCTTTTTCTTTCTGGACACATCTCTCTAAGACTTGAACAGTTTTTCTAGCTGTCATGACAAATTCCAAGTTGGAGCAAGTTTCCTTAGTAGGGAAGCTTATTTATTGTGTATTGAAGTTTAAGTGTCATGGCTTTAGTTAACATAGGCTGTACTCGGATTAGACTTAGCTTTTTGTCTTGTTATTTGAGACTTGGTCTCACTTTGTGGCCCTGACTGGAACTTGCTTTGTTCTTGGAATTGGCATTGAGTTCACAGACATCTTCTTCCCTTCCCTTCCCTGAGTGCTGAGTTAAAGGTATATCTCACACACCCAAGTCTTGGCTTTTTTTTTCAGTCAGGACTCCTGTATTCTGCTGTAAGTTCAGTATTGGGTGTGACAGACTGACTGATTTCAGCAGTAGCTACTGTTTGACAGATTTTTTGATGTAATTTCTTTAAAAAAATTTTTTTTTCTAACAGTCATTGTTTTTTTCCCAAAGTTTTTTTCAGACCTAGCCATATCAGTTGGATTTTTCTCCCTTTATCTGATAATCTGTCACCTACTCTATTTTTTTAATGTGTGTATTATATGCATGTAAGTGTATATCACTTGTTCAGGTGCCCAAAGCGGTCAGAAAAGGAAGTTGGGTCCCTAAGAGCTGGCGTTGTAATGGTTGTGAGCTTCCTGGCAGTGCTGGGAACTGAACTTGGGTCCTCTGGAGGATCAAGTGCCTTAATGGCTGAGCCATCTCTAACCCCTGTGTTAAATTTAGATGAAACCTTTTGTGCCATTTTGCTATCTTGCCATTAGCTCATTAACTTGATAGTCTTCTTTCTTTTTCTTTTTTGAGAGTAGTCAACCTTATATATTCATAGATGTGCATAATCTGTTTATTTTTAGTTCATGAAAAAGGTTTTTTTGCCAGGTATGGTAGCGGCACACTTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAGATGTGTGAATTGGAGGCCAGCCTGGTCTGCATAGCATGTTTGAGGCGGCAGCAGCTGCATAGTGAGACCTTGTCTCAACATCAACAACAAAACCCCCTTTCCCTTCAAGTTCTTTCCTCTCCAGCTAGGTATTGAGTGATGTTTACATTTTCTCTGTTTCAG
Seq C2 exon
ATGATGATGCCACGACAGAAAATGGAGCACTGGCTCCCAAGCAGGAGATGGCTTCAGCTGGAGAGTCTCATGAAGGCCCCGGCACTCTCAACATAGGTGTTCCCCAGCTTTTTAAATATGGAGAAACCTGTTTTCCCAAGGGTAGGTTTGAAAGAAAGAGAAATCCTTCTAGAAAGAAACAACACATATGTGATGAATGTGGGAAACACTTCAGTCAGGGCTCCGCCCTCATTCTTCATCAGAGAATCCACAGTGGCGAGAAACCGTATGGATGTGTTGAATGTGGAAAAGCCTTCAGCAGAAGCTCCATCCTTGTGCAACACCAGAGAGTCCACACTGGAGAAAAACCCTACAAATGCCTTGAATGTGGGAAAGCTTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGTATCCACACTGGGGAGAAACCTTACGAGTGTGTGCAGTGTGGGAAATCCTACAGTCAGAGCTCAAACCTCTTCAGACATCAGAGACGACACAATGCAGAAAAACTTTTGAATGTTGTGAAGGTTTAAGAAATTAGGAGGAAACAATCAGCACTCAGGTCTTTTTCTTCAGAAATGAAGACAAAATTAAAAACATGAAGAGATATGGAAACTTATTTTTCCCTGTTGACTGGGAAAATCTACTGGGAAATAGAAAAAAAAAACTTCATTCACCATTATTATCTTGAAAGAAATGGTGTTATACCTGCCTAGAAACTGAAATTTTAAATAATTCAGGTGTTAATACCTAAATTTTTCTTGTGAAGTTTATATTCTCTTTTTTTTCTCCCCAAGTAATGAGCTACCTGGTTCTTTGTCTCTTTCCTTTTTCAGACAGCTACTTTATTTCTGTGTTGGTCATTGGAGTGTTCTGTAAGGGTGCATACGTTTTTATTTTAAAAGGCAACATAGGAATTGTAAAATCTAAAAGCCCATCCTCAAGACTCAGAAACATCCTTTAAAGCTTAGTTTCCTTTTGTTCAGGATGAGTGTATTTGAGAAAATAGAAGATAAAGGCCAAAGCCTCAGACTCAGATGAGCCTTAAGATCTCAGATGAGAGATGGTAGCAAAACTTCAGAGAGTAGAGGGGACACACTGGGCACTTACCCAGTGAAGCATGTCACTTAGGTACAGTCATCCTGTAGGAAAACTCGAAAAGAAAAGTGATTTTACCTAACTTGTGGGAATCTTACTAATTAAAATGGTTTTCCTGTGTAAAAACAGACAGTTGTAAAAGTGATGGTAAGGCAGACACTAAGGAAGAATGTAGTGATGTTGAAAGGCAAATGTAAAGTTAGGTAATTACATGACATGGCTTTTAGAAAACCTCAAACATCTAATTCATTTGCCTCATGCTAGTTAAGGACAGGACATTCCTTGATGGGGTGGGTAACAATATCAGGTTTGCTATTTTTATTCCTTTGGTACACAAGGGTTTAACACCAGGCTAAAACAGCCATACATTTATTATTAAACATTTCTACCGACAATGCACTGTGCCAGGTACTGTACTCCTATCGTCAGTCGGTAGGAATCTGTTCCACTGTAAGTCACAAGGGATTGATTTCCCCTCAGCATTCCCCGCTCACCTCTGAGAGCCCCAGAGTTGTAGTTCTCTTGCCAGTGTGCTGTGTTTGGAGGGAGATGTCGGCTCAGAGTCAGCTAGTCAGCTCTTAGCATTCTTCAGAGGTGAGTTCAAATCACACTCTTTTAGTTTGAAAGTTAATGAATCTTAAAAATCCAAACATCATTTCTAGTAGCATTGTGGTTGTAACTACACGTTGAATGAACTGTACTTTAAACAACTAAGCTATTAATAACTAGTTTATTAGTTGTCAGAATTGATTTTTTTTTAAATTTACAGTCTTAACACATTTTTAAAAAAAATTTATTAAGAGTAATACATTTTAGTAGTAGGATTCTGTATGCCTGTATACTTGGCTAAGAATCCAAGTTCTGTGGTTCTACTATTTAATGGAAAACTCTGGAAGTTAAAGCATTGGATAAGAGAAGAGGCTTTTTATATAAGACAGGCACTGTTACATGGAAAACTATCCATGCAAGTACAGATATTTCATAGTTCCAGTGATTTGGGTCATATCTGGTGCTTTGTCAAATTTTAACGTGAAAAATGAGATTTTTGCCTGAGCCTGTTGAAAAGCAGTAATAAATGCCACACAGCTAGTGAAGTGAGGCCGAATGAAGCTTGTTCATGATTTTCTGATAACAATTATAAGAAATGTGCTTTATAGATTTAAGATTTATTGAAGTATAAATATGTAGTAATGCTATAATGTATTTTTAAGTTATACAAGAAAATGTAGGGACTTCTGTTTGGGTTTTTCTCTGTGGCTGAGAGGAAACAAGTTCATGTCCAATAAAGCTGCAAACTCCTCTGCTCTAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051469-Zfp191:NM_021559:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.480 A=NA C2=0.196
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0202312=SCAN=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000064637





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000122579, ENSMUSP00000132821
  



Associated events






Conservation


Human
(hg38)
chr18:35337771-35339828 
ALTERNATIVE
HsaINT0186576
(ZNF24)
Human
(hg19)
chr18:32917735-32919792 
ALTERNATIVE
HsaINT0186576
(ZNF24)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr24:22028588-22030509 
ALTERNATIVE
BtaINT0165104
(ZNF24)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"