BtaINT0165104 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010255 | ZNF24
Description
Bos taurus zinc finger protein 24 (ZNF24), mRNA. [Source:RefSeq mRNA;Acc:NM_001205479]
Coordinates
chr24:22028440-22031048:+
Coord C1 exon
chr24:22028440-22028587
Coord A exon
chr24:22028588-22030509
Coord C2 exon
chr24:22030510-22031048
Length
1922 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACATTTTCTGTTTATTTCAGATG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GTTTCTCTTCGGCGACGAAAACGGGAAGTGTTAGTGGAGGAGATAGTATCTCAAGAAGAAGCTCAGGGATTACCGAGTTCTGAGCTTGATGCTGTGGAAAACCAGCTCAAGTGGGCATCCTGGGAGCTCCATTCCCTAAGGCACTGTG
Seq A exon
GTGAGGACCGGAACTCTGTGTGGGCTGGAGAGTGAGAGTGTGGCCCTTTTGTCCAGAACTCTGCTTATTTTTACTGGGAGCAGGGAGGGGGAATAATCACCTTCACCTGATTGCTTAGACATAGACACATTGTAGGATTTCTATTCTTATGTGATAACAGTTGGTTTGCTAACCTTGAGTCTTTTATTCTTCAACATAACATCATCAACCTTTTCTTTGCTTTTATGTCTGTCTTTGAAGGCCTCCCCATTTCTTGTGGGCATTTGACTTACTCTGAGCCATAACCCACCGGTAGACCAGGTCCCTCTCTATTGCTTATTTGCCACCTGTTTCACATCCTTCCAGTTTCCTACCTAGTACCCTTGGTATAATAAGCTTGCTTCTTCAAATCTATTTTTTTTGTTTGTTATCACCAAAATCTTTTAGAGTTTTCAGCTTTTTTGGTTTTTCTTCAACATAAGTACAGAAAAATTAAATGGAAAGATTGTTCACTAATGCCATTCTTTCCCAGCATCTTGGCAGTTAATGCCACATACTTATTTATTTTGATACAATCCTGTATATTCCTAAACCTGCTAGATCTCTTTTTCATATTTATAGGAATTAAAATGAAATTTTGTTTGCGACTGCTTTGGGCATCATTTCTTGAGGTAGTTGAAGGTAATGCTAGTGCGAGCCAGATGAGTCCTGAGTTCTGCCCCTTTGAATTATGGGGTGTTCTTCTCTGCAGTAAAGTTTGAGAACCAGTATCTTTGGTTGTTGGAGGTGGCATCTTCCTGGGTGGCAAACTTCTCCCTTGCTTGAATTGTAGAATAGACTTAATTCTTGCCTCTTTAAACTGTAGAATAGAATAATTCTCACCTCATTTCAGCGTTCTGGTCTTTACCACACTTGGGAACTAAATTCTTTCTGTGCCATTTATCACCTTCACACTCACTTCTCTGTTATTCAAGTCTTCAGACCTCACTAATCTCTGACTCGTCAGTGTCTCTTTGTCAGCTTTCTTTTCTATCTCTTTCTTAATCATTTGTTACAGACTTTCTCACTATGTACAAGTTTTTTGAGTGCTTCTGCTCACCCTTTAGTAACTATTCATCAAAGCTTGAAGTTTCAGGAAGGTCTTAAATGAGACTTACTCATACCACTCCTGCCTATAGGTAGATGATGGTACCTCATGTTGGTAATTCAGGCTGTTCTTTCACTGTGCATATCTTAACAGGCCTAGAAGTCACAGCTCATCTTAATACCATGACAAATACCAAATGCAGCAAGTTGCTTTTATAGGAAAACTTCAGTCATTAAAAGGGCCTTGAATTTGTAAGTGTCGTGTCCCAAGTTAACACAGGATGCTCCCGGCTTACCTTCAGCTGCTGCTTGTCTGGACTGCTGTATTCTCCTTGTACTAACTTGGCTTTGACCTGCCTTGTCTTGCTCATTTTAGAAAAATCACTGTCTGACAGATTGGTTACTTACACTTTGTATTTTGATATAATTTCTCCCTTTTTCAAAGCAAAACAATGTGACTCCCTGATGGCAAATTTTGATTTATTTTTCTCCTGACCTTAGCTGCATCTCTGTGTCTCCTAACAAACTTAGACTCTCTGAAACATCTGTAGTTTTTCCACCCTTCGATTTTTGACCACCATTGTGTAACCCACTCCCTGTGCTACCACTCACTAGTATACAGCCTTTTAATTCCTCATATGTTCTCATGCTCTCACCTCATTAATCTCATAATCAGTTGTTTTCATTTTTTTTCTTTTTTGAGAGTAGGCAGTATCATCACCAGTTTCATAGTGCTGTTTATAGACATATACAAGCTATTTACTTCTAGTTCATTTTTTTAAACTTTTTTTTTTCTTCAGTTGTCTGTCCTCCCAGAATAGGAAGTAAGTGATATTTACATTTTCTGTTTATTTCAG
Seq C2 exon
ATGATGATGCTAGGACTGAAAATGGAGCTCTAGCTCCAAAGCAGGAGATTCCTTCAGCAGGAGAGTCTCATGAAGTTCCCGGCACTCTCAATATAGGTGTTCCTCAAATCTTTAAATATGGAGAAACCTGTTTCCCTAAGGGCAGATTTGAAAGAAAGAGAAATCCCTCCCGAAAGAAACAGCATATATGTGACGAATGTGGGAAACACTTCAGTCAGGGCTCAGCCCTTATTCTTCATCAGAGAATCCACAGTGGGGAGAAACCCTATGGATGTGTTGAGTGTGGGAAAGCATTCAGCAGGAGTTCCATCCTCGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCTTACAAATGTCTCGAATGTGGAAAAGCCTTTAGCCAGAATTCTGGGCTTATCAATCACCAGAGAATCCATACTGGGGAAAAACCTTATGAATGCGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACATCAGCGAAGACACAATGCAGAAAAACTTCTCAATGTTGTGAAAGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010255:ENSBTAT00000002428:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.184
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAGCTCAAGTGGGCATC
R:
TCCTGCTGAATGCTTTCCCAC
Band lengths:
353-2275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]