RnoINT0167903 @ rn6
Intron Retention
Gene
ENSRNOG00000016562 | Zfp24
Description
zinc finger protein 24 [Source:RGD Symbol;Acc:727963]
Coordinates
chr18:15914399-15918391:-
Coord C1 exon
chr18:15918244-15918391
Coord A exon
chr18:15915137-15918243
Coord C2 exon
chr18:15914399-15915136
Length
3107 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
ACATTTTCTCTTTATTTCAGATG
3' ss Score
11.58
Exon sequences
Seq C1 exon
GTTTCTCTCCGTCGGCGGAAACGGGAAGTACTTGTAGAAGAGATAGCATCTCAAGAAGACGCTCAGGGATTACCGAGTTCTGAGCTTGACGCCGTAGAGAACCAGCTCAAGTGGGCATCCTGGGAACTCCACTCTCTGAGGCACTGTG
Seq A exon
GTGAGGACCAGGACACCATGTTGACTTTCCCCAGAGTGCTTTGCTTGTTCTTGTGGCAAACCCCTTTTAGTCTGCAGTTTTAGAAATATGTCTGCATTAAGAGCTTGTCTTTTTCTGCTGATTGATTCACTGGCCTGAGGTACTTTTACTCCCAGACATTAACATCTTCAGCGGTTTTGCCGTCTTCTTTCATGAAGACCTGCCTGTGTAGGGCTCACATTTGTGCCCATGTAGCATTTGTGTGTTTCTCAGCCAGGACCTGTAGCCAAGGCTGCTTTGTTCATGGGATTCCTGAGCTGCTGCGTTTCATGCTCTTTTGCTTTCCATCTCCTTTGTACTGACCTAGTGAATTTTTTTTTTATTGTTGGATTATATTTTATTCTTTTAACTTACACTTTCAATGATTTTGGCTGTGTGTGTATGTGAAGTTATAATCAAGTCTAAAAACAAACCATAAAACATGACGAATTATGTCAAAGTCCTGCGGACACAAAGCAAATTCCCATCGTATTTCTTTTATCTTTTTTCCCTCCAAATTCTGAGCATATTTAACAGCCGTGCAGACAACAACTCACTGCTTGTTTACTGCGGGCGCGCGTGTGTCTTTTATCACTTGACCTGGTGAGTTTATCTGAAACCTCCCACAACCTTTTTATTTATTGTATCACTGAAGTTTTCCTAAAATTTCAACTATTTCAGTTTTTCCCTGTAATATTCCCTAGAGTCTTTATTTGCCTTCATGTGTGTCTTTGTAGCATGTGTGTGCTGGGTGCCCTTGGAAATCAAAAGACGATGTCAGCTCTCCGGGAGCTGGAGTTACAGATGTTTGTGGGCTGCCTTGTCGGTGCTGGAAATTAACCCTGGAAGAGTAGTCCATGCTCAACCACTGAACTTCTCCCCAGCTCCCTTAAAAAGATTTATCTGTCTTTTAAGGCTTATGTGTAACTTGTGCACGAGTGTGTGCATGTGTGTGCAGGTACCATCAGAGGTCAGGAGAGAGCATTGCAGTACAGGTACTTAATGCTGTGCACTTGTTTATGTGACCTAGTATATGCTAAACTCGCGGGCTGCAGTTTGCTTCTGCGATATCTTGTTTGAGATTGCTTCAGGATCAGTCCTCGGAGTAGGTGGAAATAATAACCAGCATGCCACAAATTAAGATATGAGCAGCGTTCTTCTCCTTAGAGGGGTGCTACAAACCAGAACTGGGGTTCAGGTGTAATGTGCAACACTGGTTTTACCTGTCATGGGACCTCGTTCCATTGGATAGTTCCGGAGCTGTATCCTTTCAAGATGTCTTTCGTGGGTAGAGAACATGTCCTCTTCCTGAATGTCAGGGTAGCTTTCCCTGTCGGCCTCATTTTAGCACTCCAGTCGCTTTCACATCCAGAACATTCCATTTATTTCAGGTCGTGTGTCCACCGGCCCCTCATACTTGACTTTTCAAGCCTGTAAGCCTCATGACCCCTCAGGCCCTTGGCTCTCCCACTCTTCTGCTTTCTCCCTTGATCAACCCTTGTGTCATTCATCACTGGTGACTTTTGAGCGCTGCTGCTCTGTGTGACAACTGTCCTCTCTCTACTGTTAAAGTTCCAGAAAAATTGGTGCGACTTGCTCTTACCCCTGCCTGTGGGCAGACAGTGCTGCTGCTTAAACTTGAGGCTTTTTTTCTAGACATATACTTCTAAGACTTGAACAATTTTTCCAGCTATCATGACAAATTCCAAGTTGGAGCACATTTCTTTAATGGGGAACCTTTCATTTATTGTGTATTGGAGTTTGAAGTGTCAGGGCTTTAGTTAATGTAGGTGGCCTCAGATTAGCCTTAGCTTTTTTGTCCTGTTCTTTGAGACTTGGTCTTTGTGTCCTGACTGGAACTTGCTTTGTTCTTGGAATTGGCGTTGGATTCAGACTTCTTCCTCCCCTTGCCTTCTGTGAGTGTTGGAGTTAAAGTGTAAGTTACCATACACAGTTCTTGGGGTTGGGGATTTGGCTCAGAGGTAGAGTGCTTGCCTAGCAACCGCAAGGCCCTGGGTTCGGTCCCCAGTTCCGAAAAAAAAGAAAAAAAAACATACACAGTTCTTGGCCTTTTTTTCCATCAGGACTCCTGTGTTCTGCTCTAAGTTCAGCATTGGCCGTGACATACTAACCTTTTTCAGCAGTAGCTACTGTTTGACAGACTTTTTTTTTTTTTTAAGATGTATTTACTTTATGTATATGAGCACACTGTCATTATCTTCAGACACACCAGAAGAGGGAATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGTCCCCTTGACAGACTTTTTATGTTATACCTTTATTTTGATGTAATTTCTTTAAAAACATTTTTTAATGGTAATTGTTTTTTATTCCAAAGTTTTTTCAGACCTAACCATATCAGTTTGATTTCCCCCCTTATCTGATAATCTGTTTGTCACCTATTCTATTTTTTTAAATGTGTGTATTATGTATGTGTGTGTGTGTCACTTGTTCCTGTACCCAAGAGGTCAGAAGAGGAAGGTGGATCCCCTAGAGCTGATGTTGTAATGGTTGTGAGCTTCCCAGGATAGGTGCTGGGAACCGAACTTGGGTTCTCTGAAGGATCAAGTGCTCTTAATGGCCAAGCCATCTCTCTAGCCCCTGTGTTAAATTTAGATAAAACCTTTCGTGTCATTTTGCTGCCATGCCATTAGCTCATTAACTGCATAATCTTCTTTTTTTTTTTTTTTTGAGAGTAGTCAACCTTATATACTCAGATGTGCACAAACTATTTATTTTTAGTTCATGAAAAAGTTATCTTCTTTTTGCCAAGCATGGTGGCACATACTTTTAATCCCAGCATTTGGGAGGCGCAGGCAGGCAGATCTCTGAATTCGAGGCCAGCCTGGTCTGCATAGGAAGTTTGAGGCTGGCAGCAGCTGCATAGTGAGACCTTGCCTCAACAACAACAAAACCCACTTCTTTCCTTAAGTCCTTCTCTCTCCAACTAGGCACTGAGTGATACTTACATTTTCTCTTTATTTCAG
Seq C2 exon
ATGATGATGCTACGGCAGAGAATGGAGCCCTGGCCCCAAAGCAGGAGATCGCTTCAGCGGGAGAGTCTCACGAGGTTCCTGGCACTCTCAACATAGGTGTTCCTCAGATTTTCAAATATGGAGAAACCTGTTTTCCCAAGGGCAGGTTTGAAAGAAAGAGAAATCCTTCCAGAAAGAAACAACACATATGTGACGAGTGTGGGAAACACTTCAGTCAGGGCTCTGCCCTTATTCTTCATCAGAGAATCCACAGCGGGGAGAAGCCTTACGGATGTGTCGAATGTGGGAAAGCCTTCAGCAGAAGCTCCATCCTGGTGCAGCACCAGAGAGTCCATACTGGAGAAAAACCCTACAAGTGTCTCGAATGTGGGAAAGCCTTTAGCCAGAATTCTGGGCTCATTAACCATCAGCGAATCCACACTGGGGAGAAACCGTATGAATGTGTTCAGTGTGGGAAATCCTATAGTCAAAGCTCAAATCTTTTTAGACATCAGAGAAGACACAATGCAGAAAAACTTTTAAATGTTGTGAAGGTTTAAGAAATTATGAGGAAACAATCAGCACTCAGGTCTTTTTCTTCAGAAATGAAGACAAAATTAAAAAGTGAAGAGATATGGAAACTATTTTTCCCCATTGACTGAGAAAATCTACTGGGAAATAAAAAAAAAAAAATCTTCATTCACCATTATTACCTTGAAAGAAATGGTGTTATACCTGCCTAGAAACCGAAATTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016562:ENSRNOT00000022304:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.168
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=14.4),PF134651=zf-H2C2_2=WD(100=13.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]