BtaINT0164949 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031874 | ZNF165
Description
Bos taurus zinc finger protein 165 (ZNF165), mRNA. [Source:RefSeq mRNA;Acc:NM_001191376]
Coordinates
chr23:30332529-30335641:-
Coord C1 exon
chr23:30335503-30335641
Coord A exon
chr23:30333513-30335502
Coord C2 exon
chr23:30332529-30333512
Length
1990 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
TTTTTTCATCATTTTTTTAGATA
3' ss Score
9
Exon sequences
Seq C1 exon
ATTCCAGTCTGTGGACATGGACAAGAACCATTCAGGAGAAAAGTGGCATCTCCTGGGCCAGCACTTAGTGTCCCGTTCCAGCCAGTGGACACCACGGCCCTTCATGGTTCTTCAGAACCCCAGCTGCTACTGGACTGTG
Seq A exon
GTAAGGAGCAATACTCTATGTGGTGCATGTCCCTGAAGTGCTAGGACAGTAAACCTCCCTTCTCAGACTATTTTTAGTAACTGTAGATGGTCCTTTCCTTTATTACTTAATAAGAAATAGAGAACTCTTTTCCTTTTGTGTCATTGGCTATCCAAAATAAGAGAGAACTTTGTTTTTTATCCAGAATGTCTCCTTTTTCATTTGTTCTTTTAGAATATTTCTAAAACATGAGATGTTTTCATGTTATGAGCTAATTAACGGAAAGAAAATGAATGGGTTGAGAAAACGTCAGGGAATGAAAAAAGAAGCAAAAGTGAAAGAAACACATGCATAGAAATAAACATGTTAATAGGAAAGCAGATATAATGATAGGAAAAAAGACAAATATGTGATGATACACTCATAAATAGAATATAATTCACAGATACATAAAACAAGATCCATATTATTGCCTTTTTATTTTACTTTTGGTTTCATGAAGCCCTCATGCTTTTATAGAAAGTTGGCCATACTTGAGCTGACTACCTCCATAGACTCCTCTTTGCTGTTCTAAAACTCATTGTTTAAAAGGTTCAAGGACTCAGTATCACTTTAGGTGCATATGGTCCCAAAAATAAACCTAAGAATAAATTACAGTAATTTTTAAGATTACCCAATTTCTGCTTTCGAGTTTGTTCTGGAAACATTTCCATCCATCTCATCTAAAACTGTAAATTTTCCCATCCTAAGACCAGTACTGCCTAACCCCTTCTCCTATCCTAGCTTATTCTAGACAAAGGAAACCCTATAAAAAGAGGGGCAGCTTTAATTCCAGTTTAATACGGTTTAATATAGAGTCATGAGTACAGTATAGATTGATGAGCTAGAAGGTAGGATTTGTGAGAACTAGATCATAAATGAGTCTGAAGAGCTCAGATGTGTTGTAGAGGAGATTAGGATTTCTAAGTAGGGTGTAAGAATGACAAGGTTTAGTGATGATTAGTCTGGTGAGGGTATTTAGGATGACTAGGAAGAATAGCCGGAGAAGGCAATGGCACCCCACTCCAGTACTTTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAGAGTCAGACACGACTGAGCAACTTCACTTTCACTTTTCACTTTCCTGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGTACAGAGTTGGACACGACTGAAGCAACTTAGCAATTAACGAGGAAGAACAGCTCTGAGTGAAACAAAAGGAGGCTGTTACAGTTATCTGAATCGGAAGTGGTGAGGTTCTGGAGTAACAGAAATGTAAAGAAAGGGAGGTATATAGGGGACATTTAGCAGAAATGAAAGAATTTGACTATCCATGAAAGATGAAGAAGAAATGGAAAGATGGATTGGATAATAGATGGATGGAGGTTTTCCCCACCACATATGCATACCTCAGAGTCTTTATAATTTTATTTTTCTCTATGCATCTATGTCCTCATATACCTTCTTTAATATGGTGCCTCCCTTTCACCCTCTAACAGTAGAAATATAGACCTAAAGTTCCCCAAGATCCTTCTCAGTCACATTTCATAGTTCTCCTTACTTTGTTCCCCCCACCTCCATTCTTGCTGGTGATGATCCTCTTCCTGGCCTTCTCTACTGTTGTCTGCTCGTCTCACATGTCTGTTTCCTCTCTCTGCCAACTACTGCATACATATGCTTTTACCAATTTTTCTTTCTCTTCTATCCTCATCCATCACTCCTCTCATTTGAAAGGTCACGTTTTTAGAGTAGCCAAATAATGGCTACTATGTAACTATGATTATTTGGCTCCTATGATTATTGTCACTATCTTGGGTGTATCTCAAAGTTTTACCTTCTTTTAGTTCAGCAAACAGGTATTTTCCTCTTTATTTTTTCATCATTTTTTTAG
Seq C2 exon
ATAACAAGAGTGAAAACAGTGAATCCATGCCAAAGCTGGACATTTATGAGAAAATGGAATCGCAGAAAATTGTATCAGGAAGAATTTCAGAATTTGTGTCAGAAGGATCTGCTGAGCCTCAAGACATCTGTAAGTCTGCAGGCAAGATAAAGAGGCAGCAGGAAAAAGACTCAGGGGAGTCTCAGAAATCATCATCTGCTCAGGATGCTGCTTTCAGTAAAATCCTCACCCACAAAAATACACTTAGAGGTGAAATAATAAGCCATGATGGCTGTGAGAGAAACTTAAATCTGAACTCAAATGAATTTACACACCAAAAATCTTGTAAACACAGTACCTGTGACCAAAGTTTCAAATGGAATTCAGATTTTATTAAGCATCAGAGAATTTATGCTGGAGAAAAAATTCACCCATATGGGAAGTCTCTCAAGAACCCAAACCTTATTAAACATGCAGCAGTTTTCACTGGCGAGAAGACCCATCAGTGTAATGAGTGTGGAAAAGCTTTCAGACACAGCTCAAAGCTCATTAGGCATCAGAGAATCCACACTGGAGAGAGACCCTATGAATGTAATGAGTGTGGAAAAGGCTTTGGGGGGAGCTCAGATCTTATTAGACACCAGAGGATTCACACTGGGGAGAGACCCTTTGAATGCAAAGAATGTGGGAGAGCATTCAGCCTGAACTCACATCTTATCCTGCATCAGAGAATTCATACCAGGGAGAAACCCTATGAATGTAGTGAATGTGGGAAAACCTTCAGAGTGAGCTCACACCTTATTCGACACTTGAGAACCCACACTGGAGAGAAACCCTATGAATGCAGTGAGTGTGGAAGAGCCTTCAGTCAGAGCTCACACCTTAGTCAACATCAGAGAATTCACAAGAGGGAAAACCTATTCATGTAAAGAACTTAAATTCATAAGGAAATAGAACAGGAAAAATATTGAGTAAATAATAAATATCAGTTGAGATGAATGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031874:ENSBTAT00000003993:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.215
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACATGGACAAGAACCA
R:
ACTGAAAGCAGCATCCTGAGC
Band lengths:
348-2338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]