HsaINT0186286 @ hg38
Intron Retention
Gene
ENSG00000197279 | ZNF165
Description
zinc finger protein 165 [Source:HGNC Symbol;Acc:HGNC:12953]
Coordinates
chr6:28086172-28089563:+
Coord C1 exon
chr6:28086172-28086310
Coord A exon
chr6:28086311-28088562
Coord C2 exon
chr6:28088563-28089563
Length
2252 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CCCTTTCTTTTTTATTTTAGATA
3' ss Score
11.59
Exon sequences
Seq C1 exon
GTTCAAGCCCATGAACATGGACAAGAAATATTCCAGAAAAAAGTGTCACCTCCTGGACCAGCACTTAATGTCAAGTTACAGCCAGTGGAGACCAAGGCCCATTTTGATTCATCAGAACCCCAGCTCCTATGGGACTGTG
Seq A exon
GTGAGGGGCAGAATGCCATATAGTGCACATCACTAAAGAAACAGGGGAATGAATCTCCCTCCACAAACTAGTCTTGGTAACTGTAGATGGTCCTTTCCTTTATTACCCAATGAAAAGAGAGAACTTGTGGCCAGGTGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGTAGCACCTGTAGTCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGACTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCATAAAGGAAAAAAAAAAGAGAGAGAGAACTTGTTTTCCTGTGAGTCTTTGGCCAATGGTAGGGGAAAAGATAATTTTGTTCCTTATCCAGAATATTTCCAAAACACAGAACATTTTTATGATATGACCAAATTAAAGGAAATAAAAGTGAATGAGTTGAGAAAATATCATGAAAAGAGAAAAGAAGGAAAAGAAAAAGAAATACATGGACAGAAGCAAAATATGTTCATAGAGAAGTACATATAATGATCAAGAGAAACAGATACATGATGATATACTGAGAAATAGTATATAATTCACAAGTAACATAGACCGTGATCCATATTTTTCCTGTTATGCTCTTGGTCTTATAAAGCTCTTTTACACTTTTATAGAAAGTTAGCTATAGTTCTAGAGACTACTTCCACAGAATACTCATCTCTGTTCTAAAACTCATCTATTTAAAAGATTCATAGATGCAGTATCACTTAAGGTGTGAATTGTCCCTATAGTAAACCCAAGAATAACTTACCGTTAATTTTTTGGTTTGTTTGTTTTGTTTTGTTTTGTTTTTCCTGACACAGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTATCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACATGTGCCTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACTTCGTGATCCGCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGCCACGGAGCCTGGCCACAATTAATTTTTAATAAATTTCTACATATTCTGCCTTCAGTTTTGTTCTGGAAACATCTCCATCTGTCGTATATAAAATTGTAAATTTCCCTCACCCCATGAACAGCACTCCCTAACCCTCTTTCCTGCCCTAGCGTATTGTAGACAAAGGACAGCTTATAATAAAGAAGGGCGGTTCAATTCCAGCACAGTATAGAGTGGGATTTGTGAAGACTGGATCATAAATGGATCTTGGAAACCAGGCTTGGGAATTTAGACTTGAACAAAAAAAGAGAGAGAGAGATTCAAGGTTTTTGAGTAGGGTATGAAAGGATGGCAGTGTTTAATGACCATTAGTCTAGTAAGGATCTTTAGGATAACTAGGAAGAAGAAAAGTGCAGAGTCAAAACAGCAAGGAGGCAGTTAAAGTCTAGATAGGAAATGGTAAGGTTCGAGACTATGGCGATGGTAGCAGAAATATAAAGGAAGGGATTTATACAAGGGACACTTAGTGGACAGTGATGACAGAATTTAGAAGACTGATTAACCATGGAATATGAGGAAGAAATAGACAATAGGTGGATGGAAGTTTTCTCACACATACTTCACAGTCACTTATAGCTTTACTTTTCTCTCTTGTGTTCTCATCTGCTTTCTTTGAGGTAGTGCCTCCATTTTCCCTCTAGAAATGTATCATAGACCCAAGGTTCCCAAGATCTGCTGCAGTCAACATTGTAGAGTTCCTTCTCCGTACTCTATCTCCCCCTATCTCTTGAGTTCTTGCTGATGACAATCCTCCCAATCTTTTCTAATATATATGCTTCACGTCTGATTCCTCTCTCTGCCAACCACTGCAGGCATTACTTGCTCTTACCAATGTTTCTTTCATTCCTATCATCCTCTTTCATTCTATCATTCCTCTCATGTGAAAGGTCATATATTAAAGTGGGCATATCAATATGTAACTATCTTGAGCATGCTATAAAATTTTCTTTTCGTGCAGCAAACAGGTAATATTTCCCTTTCTTTTTTATTTTAG
Seq C2 exon
ATAATGAGAGTGAAAACAGTAGATCCATGCCAAAGCTGGAAATTTTTGAAAAAATTGAATCACAGAGAATTATATCTGGAAGAATCTCAGGATACATATCAGAAGCATCTGGTGAGTCTCAAGACATCTGTAAGTCTGCAGGCAGGGTAAAGAGACAATGGGAAAAAGAATCAGGGGAGTCTCAGAGACTCTCGTCTGCCCAGGATGAAGGTTTTGGTAAAATCCTCACCCACAAAAATACAGTCAGAGGTGAAATAATAAGCCACGATGGATGTGAGAGGAGATTAAATCTGAACTCAAATGAATTCACACACCAGAAATCTTGTAAACATGGTACCTGTGACCAGAGCTTCAAATGGAACTCAGATTTTATTAACCATCAAATAATTTATGCTGGAGAAAAAAATCACCAATATGGAAAATCTTTCAAGAGCCCAAAACTTGCTAAACATGCAGCAGTTTTCAGTGGAGATAAAACTCATCAGTGTAATGAATGTGGGAAAGCTTTCAGGCACAGCTCAAAACTTGCTAGGCATCAGAGAATCCACACTGGAGAGAGATGCTATGAATGTAATGAATGTGGGAAAAGCTTTGCAGAGAGCTCAGATCTTACTAGACATCGGCGAATTCACACTGGGGAAAGACCCTTTGGTTGCAAAGAATGTGGGAGAGCATTCAACCTGAACTCACATCTTATCAGGCATCAGAGAATTCACACCAGAGAGAAACCCTACGAGTGTAGTGAATGTGGGAAAACCTTCCGAGTGAGCTCACATCTTATTCGACACTTTAGAATTCACACTGGAGAAAAACCCTATGAATGCAGTGAGTGTGGAAGAGCCTTCAGTCAGAGCTCAAACCTTAGTCAACACCAGAGAATTCACATGAGGGAAAACCTATTAATGTAAGGAACTTAAATTTGTAAGTAAATGCTGAGGAAATGGCACAATATGAAAAATATTAAATAAAAAATAAATATTGGGCAAGATGGAAGACTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197279:ENST00000377325:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.166
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains