MmuINT0178824 @ mm9
Intron Retention
Gene
ENSMUSG00000063108 | Zfp26
Description
zinc finger protein 26 [Source:MGI Symbol;Acc:MGI:99173]
Coordinates
chr9:20249338-20250341:-
Coord C1 exon
chr9:20250190-20250341
Coord A exon
chr9:20249430-20250189
Coord C2 exon
chr9:20249338-20249429
Length
760 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTATTATTTTATTTTTCAAGAAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GAATTTAAGTCATCCAGATTAAGGAGAATGAATCTCGTCATTTTCCACTTTGATGCATAAGTTTCCCTGACGTGTCCTTGGAATCGCAGAAGAATTTGGTCACATATTTTACCATCAGACTAAAGAGATGGACTTGACTAGTTTGTCCTGTG
Seq A exon
GTAAGTCCTGTTACTGCTGTTATTCTGTTGTAGGTCCTGCCTGCACAATATAGAGCCAGAGATCTGCCAGTCTGTTATTTAGTGCTGAGGTGGGCTGAAGAGGACTTGTTTTGTATATCTAGCATGTGCTTGGGAGCAGGCACTGCATAATCATCACTGATACATTTATATATATTATTTATATATATATATAATATATAAAAATATTATATATAATTATATAAAATCATATATAATTAAATATATAATTATATATTATATTAATTATATATAAAATTAAGTATATGATAAATTATATATAATATATACATATAATTTTAATCATAGGCAAATTAAGAGTTATAGTTCTCAGAAGTTAAGTTTCCCTTGGCTTTAATGTGAAACTAATGCACTTTTTTTTTTCTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCAGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCCTGCCCAGCTCTAATGCACTTTTCTTAATGGGCAAGATAGTTAATCATATTTTCTTGCTGTAAAAATTGGTATGGCATTGTAGGTTACGGGGGTTTATATCTTGAGTGAACCAAGTTATATATTAGTTGCAAAAAGATAAACTCCCACCCTCACAGTGAATGTGGGCTTCTTGGCAGCTTTGTATTGATGTATCTTTTATTATTTTATTTTTCAAG
Seq C2 exon
AAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGACAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063108-Zfp26:NM_011753:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTCATCCAGATTAAGGAGAATGA
R:
TTATTACAGTTTTTCAGGCAATCAGC
Band lengths:
238-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: