MmuINT0178957 @ mm10
Intron Retention
Gene
ENSMUSG00000031079 | Zfp300
Description
zinc finger protein 300 [Source:MGI Symbol;Acc:MGI:3045326]
Coordinates
chrX:21079174-21084000:-
Coord C1 exon
chrX:21083908-21084000
Coord A exon
chrX:21083292-21083907
Coord C2 exon
chrX:21079174-21083291
Length
616 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTATTATTTTTCTTTTCAGAAG
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGTATCCTATTACCAAACCAGAAGTGATCGCCTCTTTAGAGAAAGGAGTCCTTGGGATAATAAAGAGAGAAATTCCAAGTTCAAGTTGCACAG
Seq A exon
GTAAGAAGAGAAAATTAGATGGTGAAAGCAAGACCCTAAATGCTCTGGTGAAGGTTTTCTATCTCAAAAGATAGAAGGATCTCAAAAGATCTCAAAAATATCTTTCTAAATTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTACTCATTCCAAATTTTTAGTTTAGTAAGCTTATCTCACAGTAACCTTTGAATGAGATGTTAAGAAAGAAACTGTACCCTGCTTTGGCTTATTCCTTCAGCTTCTTTTTCCATTCATTCAATCATCTCCAGCCTTTCTGAAAGCATTCTCGGTGTCCCTGCCCACAATCCTAAATTTACTGTCTTTTCAGGATCCCTTTTTCTATTCCTAGTTCTCTGAACCTGTTTTTAGTTTCCCCACTTTTAACCTAATTTTCAGTCATATTACTTATATTTATTGTTATTTCTTGTTCCAATGTTCATTAGATCACCTTAGAGTTTGTTCCCTCAAGCTCTTAGTGTAAGAGAGATGCATGCTTGGAACCTTTTTCTGGGAAATATGTAGAGTCAGAAGAAAATAAAAGTGAACACCATCGCCTGCTTCTGACTGGCTTTATTTACAGAGTCTGGTTTATTATTTTTCTTTTCAG
Seq C2 exon
AAGATGGTCAAGCTGAATACAACTTGGCATGGCATCAGAAAAATCAAAATATGCACCTGGAGCAAGCTATATCCATTATTGAGAAAAATGTAACTGAAGAAAGAAGTTATGAATATGATGGATTTGTAAGCCCACTTTCTCAGAGCACATGGGTAGTTTCTTCAGGACCCACACCCTATATGAATAACTCATTTGGAGAAAGTATTAAAAATAATTTAGGTTTAGTCAATCCTAGTAGTATGAGCTTTGCAGCTCAGGAATGTTATGAATGTAATAGATGTAGGAAATTATTAATTCCTGGCAGACATGAGATAAGTGACAGAATGAAATCCCAGGAGCATAATATGTTTGGAAAAGAGCATATTTATAACTTTGTTCAGCATGACTTGACTCAACTTGGAGACAAAACCTATGAATGTCCTGAGTGTAGAATAACCCTTAGCCCAAGTTCATTCCTTGTTGTTCATCAGATCACTCACATAGGAGAAAAGCCTTATGAATGGGCAAGATGCAGAGAAGCATTCAACAACACAGCACACCTCAGTCTACATCAAACAATGCACACAGGAGACAAGCTTTTTGAATGTAATGAATGTGGCAAGTCCTTCAGAGAGGAGTCAACACTGCATATACATCAAAGAACACATACAGGTGAAAAACCATATATATGTACTGAGTGTGGCAATGCTTTTCAAGAAAAGACAAATCTTATCATACATCGGAGAACTCACAAAGGAGAGAAGCCCTATAAATGTACAGATTGTGAGAAAACCTTCAACCAAAAAGCTCATCTTAATGTACATCAGAGAACACACACAGGAGAAAAACCTTTTGAATGTACCAATTGTGGCAAGTACTTCAGAGAGAAATCAACTCTGAATATACATCAAAGAACTCATACAGGAGAGAAACCATATGTATGCAATGAGTGTGGCAAAGCCTTCAGAGAAAAGACAAAACTCATTATACATCAGAGAACTCACACAGGAGAAAAACCCTATGAATGTTCAGAATGTGGGAGAGCATTTAACCAAAAGGCACACCTCAGTGTACATCAGAGAACACACACAGGAGAGAAACCTTTTGAATGCAATGAATGTGGCAAAGCTTTCAGAGAAAAGTCAACACTGCGCAGACATCAAAGAATTCACACAGGAGAAAAACCTTATGTGTGTTCAGAATGTGGAAGAGCCTTTACCCTTAAGCTAAGCCTTAGTGCTCACCAGAGAATTCATACAGGGGAAAAAACAGATGGATGTACTGTATGTGGAAAAGTCTTCTCCCGGAAGTCATACCTCATGTTACATCAGAGAGCTCATACAAAAGAAAGACTTGAAAAATCATATGAATGCAATGAATGTGATAAAGCATTCTTACAGAAATCATATCTCATTATTCATCAGAGGGTTCATGCAGGAGAGAAACCCTATGAATGTAATATATGTGAGAAATCTTTCTCCCAAAAATCATATCTCATTATTCATCAAAGAATCCATACAGGAGAGAAACCGTATCAATGTGATAAGTGTAGCAGAGCCTTCAGAGAGAAGTCCAAACTCACTGTGCATCAAAGAACTCACATAGGAGAGAAACCCTATGACTGCCCTGAATTGGAAAGAAACTTTCCAGAGATCAAAGTTCCTCATGGATTAGAGAACTCAGAGATGAAAGAAAACAAAGAACTGAAAATGGAAAATCTGTCATAGTAAAGTTAAAGAAAATGGAAATGCAAAAGGCAAGGGGAAATTGTGCTGTAGCTAGGGTGCTTTTCTAATCATATGACACACTTGTCCTTAAAGATCAGCACCAGCCATATTGAGAGAAGAACATTCTGAGTAAAAGAAATAGGAAGATCTTATTTCTTAAAGAAAAGAACTTGGCCTCTGTACTTTTTTTTATCATGGATATATTGAATTATCATTTGTTATCAAAGAGGTTGTCAATGCTGAAATCTTTTCAAGTCTTCAATGTATAAAAGCTGTCAGTTGAAAAACAAACCTCATCATAAATGTGGGCATACATATAAAAAGAATTCAATTAATTAATTTCTCAGAAGTAAAGTAAAGGAAATATGTAAGTTTCCAAATTTCAAATACTCATAGAAAACGTAAAAATAACGTTAGAAAAAGTGGTTTACCAAACAATTTTAAGTTAAATATTTAAATATAACCATTAAAGGAATATATTACAAAATTCCAAATTATTTTAATAATCAGAACAATGTAAGAAAATACTACTAGAGTATCAAATCCAGTGTTAGGCAGTAATAACAGTTGATAATGTCAATGTTTCCTCCCCAGCCTGATCTGGGAAGACTATAAGCTTCCAAGGACTATAAGATGCCTAATAGGCTTTAGAAGACATGTTTTTGGCACAAATTCACCAGTGTTCATTTCTGCTGCTTTTAATTAATGCCTACCACATTCATAATTTTGTCAATAGCCAGCATGGTAGCATCTTTTATGGACTCCCAGAGAGATGTGAAATTTGGTTATCTATCCCGGTTGGGGTGAAATAATGGAAAATTCCAGTTGACCTTAAGGAGGAGGTCTTGAACTCTCCTTGCCATGCAAGGACAGCTAGCTGTTTTACTGATCGTCTGTGTTTATTTTGATGAACGCTGAAAGCAAGGCTTTGGGTAACTGAGCCCTGACCATGGACTACAAAACAACATGAGCAACTACTTCATGAGAATAGCTACTTCCAATGGGACTGCCCAATAAAATGAGAGCAAATGGCAAGTAGTTAATAGCTGTGTTCAAGACACAGCCTGAAAACCAGGCATTCTGTAAAAAGAAATTATCACTTTGTGTGTCCTTTGAATTCTTTGTCTAAATTACAAGTCTGTCATTTTAAACTTTAGACTTAGATCATGAAAGAGATAATAGGAGGTTGGGGCTTAGAATGGAAGTATGTTAGAGTATGTGGTAGAATGTGACTATTTTAAACTCTCATTGCACACTGTATTTTCTCTATTTAATTTAATTCTCCCCGAAGAGGCCACAAATGTCTTAAATAAAGACCCTGTAGTGACCTAATCTGAAAATGATGCTTTTAAAGATAGGACATCTTTCATATCCTTATACCCAACCCCTCTATCTCTAAATCTGTAATTGAATTTTTTTTTTTGGATGCAGGGTCTTTATGTAGGCTAGGCTGCTTTATGGTTGTAATTTTATGCCATTGCCACCTAAGTGCTGGTATGACAGGCATGTACCACCATATACATATCTTTTTTCAATTTTTTATTAGATATTTTCTTCATTTACATTTCAAAAGCTATTCTGAAAGTCCCCTATACCCTCCCCAACCCTGCTCCGCTACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCCCTCTTTCCATTGATGGCTGACTAGGCCATCTTCTGCTACATATGCTGCTAGAGACACAAGCCCTGGGGATACTGGTTAGTTCATATTATTGTTCCATCTATAAGGTTGCAGAGTCCTTCAGCTCCTTGGGTGCTTTCTCTACCTCCTCCATTGGGGGCCCTGTGTTCAATCCAATAAATGACTATTAGCATCCACTTCGGTATTTGCCAGGCACTGGCATAGCCTCACAAGAGATAGCTATATCAGGGTCCTTTCAGCAAAATCATGTTGGCATATGCAATAGTGTCTGGGTTTGGTGGTTGTGTACGGGATGGATTCCTGGGTGGGGCAGTCTATGGATGGTCTTTCCTTCCATCTTAGCTCTGAACTTTGTCTCTGTAACTCCTTCCATTGGGTATTTTGTTCCCCATTCTAAGAAGAAGCAAAGTAATCCACACTTTGGTCTACCTTCTTCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTGGATATTCTAAGATTCTGGGCTAATATCCACTTATCAGTGAGTGCATTTCATGTGTGTTCATTTGTGATTGGGTTACCTCACTCAGGATGATATCCTACAGATCGATCCATTTGCCTAGGAATTTGATGAATTCATTGTTTTTAATTGCTGAGTAGTACCCCATTGTGTAAATGTACCACCATTTCTGTATGCATTCCTCTGTCCAGGGACATCTGGGTTCTTTCCAACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031079:ENSMUST00000040667:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACCAGAAGTGATCGCC
R:
AACATTCCTGAGCTGCAAAGC
Band lengths:
346-962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types