RnoINT0168016 @ rn6
Intron Retention
Gene
ENSRNOG00000046469 | Zfp300
Description
zinc finger protein 300 [Source:RGD Symbol;Acc:2321626]
Coordinates
chrX:908482-911067:+
Coord C1 exon
chrX:908482-908574
Coord A exon
chrX:908575-909161
Coord C2 exon
chrX:909162-911067
Length
587 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTTATTACTTTTCTTTTCAGAAG
3' ss Score
7.9
Exon sequences
Seq C1 exon
GGTATCCTATAACCAAACCAGAAGTGATCAGCTCTTTAGAGCAAGGAATCCTTGGGATCATAAAGAAAGAAATCCCAAGTTCAAATTGCACAG
Seq A exon
GTAAGAAGAGAGAATTGGAGGATGGGCATAAAAGTCCCTAGATGCTCTGGTGAAGGTTTTCCATCTTTAAGATCTAAAAAATATCTTCCTAAATATACACTGTTACTCCTCATTCCAAATTGTTACTTTAGTAGACTTTTCTAATAGTAACCTTTGAGTGAGATGTTAAGAAAGAAACTGTACTCTACTCTGGCTTATTCCTTCTGCTTCTTTTTCCATTCATTCAATCATCTCCAATCTTTCTGAAAGGATCTTAGGATTCTGGGTATCTCTACCCCCAATCCCAAATTAGTGTCTTTCCAGGATCCCTTTTCTTATTCATGATCCTCTGAAACTATTTTTAGTTTCTCCATGTTTAACCTAATATTCGGTCATATTTCTTATATTTATTGTTATTTTCTTGTTTCAATGTCCATTGGGTCACCTTGTAGTTTGCTCCATCAGACTCTTAGTATAAGAGAGACACATGCTTGGAATGTCTTTCTGGAAAATACGTAGCATTAGGACAAAATAAAAATGAACATCATCAGAAGCCTGCTTCTGACTGGCTGTATTTACAGAGTTTGGGTTATTACTTTTCTTTTCAG
Seq C2 exon
AAGATGGGCAAGCTGAATACAACCTGGCATGGAATCAGAAAAAACAAAATATGCCCCTGGAACAGACTATATCCGTTATTGAGAAAAATGTGACTGAAGAAAGAAGTTATGAATGTGATGGATTTGTAAGCCCACTTTCCCAGAACACATGGGCAATTTCTTCAGGACCGACACCCTATATGAATAACTTATTTGGGGAAAGTATTGAAGATAATTTAGGTTTACTCAATCCTAGTAGTCTGAACTTTGCATCTCAGGAATGTTATGAATGTAATAAATGTAGGAAATTATTAATTCCTGGCAGACATGAGATAAGTGACGGAATGAAGTCCCATGAGTATAATATGTATGGAAAAGAGCATATTTATAACTTTGTTCATCATGACAACTTAACTCAACTTGGAGACAAAGCCTATGACTGTCCTGAGTGTAGAATAACCCTCGGCCCAAGTTCACTCCTTTTCGTTCATCAGATCACTCACATAGGAGAAAAGCCTTATGAATGGGCAAGATGCAGAGAAGCAATCAACAACACAGCACACCTCAGTCTACATCAAACAATGCACGTGGGAGACAAGCTTTTTGAATGTAATGAATGTGGCAAATCCTTCAGAGAAGAGTCAACACTGCATATACATCAAAGAACACATACAGGTGAAAAACCATATATATGCACGGAGTGTGGCAGTGCTTTCCAAGAAAAGACAAATCTTATCATACATAGGAGAACTCACAAAGGCAAGAAGCCCTATAAATGTACAGATTGTGAGAAAACCTTCAACCAAAAGGCACATCTGAATGTACATCAGAGAACACACACGGGAGAAAAACCTTTTGAATGTACCAATTGTGGCAAGTACTTCAGAGAGAAATCAACTTTGAATATACATCAAAGAACTCATACAGGAGAGAAACCATATGTGTGCAATGAGTGTGGCAAAGCCTTCAGAGAAAAGACAAAACTCATTATACATCAGAGAACTCACACAGGAGAGAAACCCTATGAATGTTTGGAATGTGGGAGAGCCTTTAACCAAAAGGCACACCTCAGTGTACATCAGAGAAGACACACAGGAGAGAAACCTTTCGAATGCAATGAATGTGGCAAAGCCTTCAGAGAAAAGTCAACACTTCGCAGACATCAAAGAATTCATACAGGAGAAAAACCTTATGTGTGTTCAGAATGTGGAAAAGCCTTTACCCTTAAGCTAAGCCTCAGTGCTCACCAGAGAATTCATACAGGGGAAAAAACAGATGGATGTACTATATGTGGAAAAGTCTTCTCCAGGAAGTCATACCTCCTGTTACATCAGAGAGCTCATACAAGAGAAAAATTTGAGAAATCATATGAATGCAATGAATGTGATAAAGCATTCTTCCAGAAATCATATCTCATTATTCACCAGAGAGTTCACACAGGGGAGAAACCCTACGAGTGCAATATATGTGAGAAATCTTTCTCCCAAAAGTCATATCTCATTATTCATCAAAGAACCCATACAGGAGAGAAACCATATCAATGTGATAAGTGTAGCAGAGCCTTCAGAGAGAAGTCCAAACTCACTGTGCATCAGAGAACGCACATAGGAGAGAAACCCTATGACTGCTCTGAATTGGAAAGAAACTTTCCAGAGATCAAAGTTCCTCATGGATTAGAGAATTTAGAGATGAGAGAAAACAAAGAACTGAAAATAGAAAATCGGTCATAGTAAAGTTAAAGAAAAGGGAACTGTAAAAATTGATAGGGAAATTGTGCTGTAGCTAAGGTGCTTTTCTGAACATATGACACTTAGGCTTAAAGACCAGAACCAGCCATGTTGGGAGAGGAGCATTCTGAGTCAAAGAAATAGGAAGCTCCACTTTCTTAAGGAAAAGAACTTGGCCTCTGTACTTTTGCATCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046469:ENSRNOT00000072087:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.0),PF0013017=C1_1=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAAGTTCAAATTGCACAG
R:
CATGGGACTTCATTCCGTCACT
Band lengths:
357-944
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]