BtaINT0165816 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003541 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:HGNC:24722]
Coordinates
chr18:58181132-58183055:+
Coord C1 exon
chr18:58181132-58181227
Coord A exon
chr18:58181228-58181562
Coord C2 exon
chr18:58181563-58183055
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATCATTTCCTTTTTTCTTAGGAA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GATATCAAGGTACCAAACCAGATATGCTTTCCAAGTTGGAACATGGAAGAGAACCATGCATAATAGAAAATGAAATGCGGAATAGAATTTGTCCAG
Seq A exon
GTAAGTGAGTTAGAATCAGCAATGGGAGTGACCAAGGAAGTCATATTCCAGTTTTTTCTAGAGAAGGAGTCACAGCTGTGAGGGTGACTGATGCTCAACAGCTGTTCCCCATATTCATCTATCCAGATGAGAACTCTTTCTGGGTATTTAGCTTTAAATATATTCCTTGTCTCTTTTTGGATCTGATATTCATTCACTTCCTCATACATCTTTATACTTTTATACTGGGATTACATGGTAGATAATAAAGAGCACCCCCACACACCATGTCATTTTTTAAGCCTTTCATCCCATACCAGTCTCATGAAATAATTTATCATTTCCTTTTTTCTTAG
Seq C2 exon
GAATCCGGAAAGGTGACAGTTATTTGCCAGAGCACTCTCGAAACCAAAGATTTCTGAAGAGCATGCAACAGTGCAATGAACAGAATGCATTTAGAAAGAGTGTTCATCTGAGCAAAACACATTTCACCCTAATTCAAGATCATATATTTAACTTACATAGAAAAGCTTTGGAATCAAGCTTAAGTTTAATTAACCAGAAGAGCAGCTATGGAATAAAGAACCCTGTGGAGTTTAATGGAGATGAGAAATCCTTTCTACATAGTGATTGTGGACAGTTGTATTCTGGAATTATATTTCCTGAAAGTACAGAACACATTAGTGCTCAATTCCAATTCCTTAAGCATCAGAGGACTCACAAAATAGAGAAATCTCTAGCCTGTGTTGAAAGTGAGAAGCCATGCAGCAGGAAATCTCAGCTTATTTCTCATGAGAGTGTTCATACTGGAGAGAAACCCAGTGGGGGTAATCCATGTGAGAAATCCTTCTCCAGAAATGTCACATTAACTAAACATCAGAAAACTCAAACACGAGACACACCCCACTTAACCAGTGAGCCCAGCAAAGGCTGTACTGTGAAGAGCAGCTCCCCTGTACATCACCAAACCTGCACAGGAGAGAAAGCCTATGTATGCAGTGAGTGTGGAAAAGGCTTCACCATGAAGCGCTATCTGATTGCACATCAGCAAACTCATAGTGGAGAGAAACCTTACGTATGTGGTGAATGTGGAAAAGGCTTCTCCGGGAAGAGTAATCTCACTGTGCATCAGCGCACCCACACGGGGGAGAAACCCTATGTATGCAGTGAGTGTGGGAAAGGCTTCACCATGAAGCGCTATCTTGCTGTACACCAGCGAACTCATACTGGAGAGAGGCCATATTTGTGCAGTGAATGTGGGAAAGATTTCGCTGTGAAGAGTAATCTCACGGTACACCTGCGATCTCACACAGGGGAGAAATCTTACATATGTGGTGAATGTGGGAAAGGCTTCACTGTAAAGAGTAATCTCATGGTACACCAGCGAACTCACACGGGAGAGAAATCTTACCGGTGTAACGAATGCGGGAAAGGCTTCACCACAAAGCTCACTCTCATTATACACCAACGAACTCACACAGGAGAGAAACCCTATGAGTGCAATGAGTGTGGTAAAGCCTTCAGTCAGAAGATATGCCTCATACAACATGAGAGGTGTCACACGGGAAAGACTCCCTTTGTATGTACTGAGTGTGGAAAATCCTATTCCCACAAGTATGGTCTCATTACCCATCAGAGAATTCACATAGGAGAGAAACCCTATGAGTGTGATGAATGTGGAAAAGCCTTCACCACAAAGTCAGTACTCAATGTCCATCAAAGGACTCACACAGGAGAGAGACCATATGGGTGCAGTGATTGTGAGAAAGCCTTCTCCCACTTGTCAAATCTTGTGAAACATAAGAAAATGCACATCAGAGAAATGGGTAGATCCAGTCAAGTTGGAAATGCCTTTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003541:ENSBTAT00000004602:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGGAACATGGAAGAGAACCA
R:
TCCAGAATACAACTGTCCACAA
Band lengths:
350-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development