HsaINT0187871 @ hg19
Intron Retention
Gene
ENSG00000142556 | ZNF614
Description
zinc finger protein 614 [Source:HGNC Symbol;Acc:24722]
Coordinates
chr19:52516577-52521356:-
Coord C1 exon
chr19:52521261-52521356
Coord A exon
chr19:52520613-52521260
Coord C2 exon
chr19:52516577-52520612
Length
648 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTTACTCTGTTCTTTCTTAGGAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GGTATCAAACTAGCAAACCAGATGTACTCTCCAAGTTGGCACATGGACAAGAACCATGGACAACAGATGCTAAAATTCAGAATAAAAATTGTCCAG
Seq A exon
GTAAGTGAGAACCAGCAAGGACAGTGGCTATAGGAGTCTTATTGTAGTCATTAAGGAAAGGTGTCACATATATGAAGTATCTGAGGGTACCTAAGCAGCTCCACTATATATTCATCTCCCCATCTGATAACTTTTTTAATGCTGTTATAGCTTTAAAGACTTTTTGTCTTTTCTTGGATCTGATTTCTTGGATATATTTCAGCTTATATCTTCATAATTTCCTTTTATACTGGGATCGTAGAGTTGACAATAAAGAGCCAGCCCCCAGCAAATCATCTCATAAGCTAAGATTTTTTTTTTTTTTTTTTAGACTGAGTCTCGCTCTATCACCCAGGCTGGAGTGCAATGGCCCAATCTCGGCTTGCTGCAACCTCGTCCTCCTGGGATCAAGTGATTCTCCTGCCTCAGCCTCCTGAATAGCTGGGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTAATTTTAGTAGAGACGGGGTTTCACCACATTGGTCAGGCTGGTCTTGAACTCCTGACCTCGTGATCTGCCCGCCTCAGCCTCCCCAAGTGCTGGGATTGCAGGCATGAGCCACCGTGCCCGGCCTCATAAGCATTTTTATCTCATACAATTCTCATGGAAGAATTTGTTACTCTGTTCTTTCTTAG
Seq C2 exon
GAATCGGGAAAGTTGACAGTCATCTGCAAGAGCACTCTCCAAACCAAAGACTTCTGAAGAGCGTGCAGCAATGCAATGGACAGAATACACTTAGAAATATTGTACATCTCAGCAAGACACATTTTCCTATAGTGCAAAATCATGATACATTTGACTTGTACAGAAAAAATTTGAAATCAAGTTTAAGTTTAATCAACCAGAAGAGAAGACATGGAATAAATAACCCTGTTGAGTTTATTGGAGGTGAGAAAACACTTCTACATGGTAAGCATGAACGTACGCATACTAAAACTAGATTTTCTGAAAATGCAAAATGTATCCATACTAAATTCCAAGTCTTCAAGCATCAGAGGACTCAGAAAATTGAGAAACCCCATGCATGCATTGAATGTGAGCAAACCTTCCTTAGGAAGTCTCAGCTCATTTACCATGAGAACATTTGTATACAAGAGAATCCTGGAAGTGGTCAATGTGAGAAATTATCCAGAAGTGTCCTGTTCACTAAGCATCTGAAAACTAATACAACAGACAAAATCTGTATACCCAATGAATATAGAAAAGGCTCTACTGTGAAGAGTAGTCTCATTACACATCAACAAACCCATACAGAAGAGAAATCCTATATGTGCAGTGAGTGTGGAAAGGGCTTTACAATGAAGCGCTATCTAATTGCTCATCAGCGAACTCATAGTGGAGAGAAACCTTATGTGTGCAAAGAATGTGGAAAAGGTTTCACTGTGAAGAGCAATCTCATTGTACATCAGCGAACTCATACAGGGGAGAAACCCTATATATGCAGTGAATGTGGAAAAGGCTTCACCATGAAGCGCTATCTTGTTGTACATCAGCGAACTCATACTGGAGAGAAACCCTATATGTGCAGTGAATGTGGAAAAGGCTTTACCGTGAAGAGCAATCTCATTGTACATCAGCGCTCCCACACAGGAGAAAAATCTTACATATGCAGCGAATGTGGAAAAGGCTTCACTGTCAAACGCACTCTCGTTATACATCAGCGAACTCATACAGGAGAGAAATCTTACATATGCAATGAATGTGGTAAAGGCTTCACCACAAAGCGCACTCTTATTATACATCAGCGAACTCATACAGGAGAAAAACCCTATGAATGCAATGAATGTGGTAAAGCCTTCAGCCAGAAAATATGCCTCATACAACATGAGAGATGTCATACAGGAAAGACTCCCTTTGTATGTACCGAGTGCGGAAAATCCTATTCACACAAATATGGCCTCATTACCCATCAGAGAATTCACACAGGAGAGAAACCTTATGAGTGCAATGAATGTGGAAAAGCCTTCACCACAAAGTCAGTACTCAATGTACATCAAAGAACGCATACAGGAGAGAGGCCGTATGGATGCAGTGATTGTGAGAAAGCCTTCTCCCACTTATCAAACCTTGTCAAACATAAGAAAATGCACACAAGAGAAATGGGTAGAATCAGTCAAGTTGAAAACTCCTGTAATGGAGAGTCACAGCTCCTTCCTTATAAGTGAACTCATGCAGAAGAAAACCCTACTAGTGCCGTGACTATGGAAATGCCTTTTGTGGCAACTCAGACTTCATTAAACATCAGTGTGTTTCTAGCCAATTGGAACATAAACATGGTGCTGCCTGTTGACAGATGTGTGTCTGTCCTCAGGAGGTGAAATAATTTGCCCTAGAGATCAATTTGATGAATACAGTAAATAAGGTAGTGCCTTTAGTGGTCTTTTACCTCATATTTTCTGTCAATGAAAATACGTTGAATAAACTATATTAATGTGGAGATGTTTTGAGCAATAATTTCTGCTCATATGTCTGAAAAGTATACAGAGATAAATTCTGTGAATACAAAGACTAAGAAAAGTCTTCTGTGGAAAGATAGACTTTATTATCAGGTTTCATCATAGATTTCAACGTAAGTGAGCTTATTGTTGATAGAAACATGATGACCATGACAAAGTCTTTACTCAGAAATATGACCTCAGTGAGTGTCAAAGTTTACACTGGAAAATAACTTTAAGGTGACAGTATTGATGGCAGGATTTCAGCGACGCACTCTGCTTCATCATTTGTCAGGAGATCACATAGAAAGTAAAATTGTTCCGAACATGCTATCAAATAAATGTGGAACACCTTTAGCAAACTATCAACAGCTCATGAAGGCATGAAATGTGGTGAAAATGATGAATATTTGAGTGCTTTTTCTTAATAAGTATAACCTTAAACATCAGCTAATACACCTGGTGTGCATTTTCAGTCAGGATACCTTAATCCTCATTTCTAGTTGCCTTGCCAATGATTCCATAATATACTGTCTCATTACTGTTTATTTTTACTGTTGTGTAAAATTGTGGTATAATGAGAAATACATTTGGTCTTTGTTCCTGGTTCCTGGCATAGAGCTCCTAAAACGCTTAGAATTTCATGAGTGATAAGAGTTTTTTGGTTTTGTTTTGTTTTTGCTGTTGTTGTTATTCATAGCACTGCCCTTTTAATTACACCTGATTATACTACTGAAGTGACTTATGGTTGCTCCCCTAGACAGCCTCAGAATGGGGCTGTTCTCTAGGAAGATCAAGTAACTAGAGGATGGAGACTTTGTGCCCCATTTCTCCCACCTCCTGGAAGGGGAGGGGTGCTGGAGATTAGATTAGACAATGAGATTAAGAGAACTCCAAATAGCCCAAGAGGGTGGTGCACCCCCAACTTCATAGGGGTAGAGGCTCCTGAGATTAGGAGAACCCTTTTTAGGCTTTACTCTATGTACCTCTTCATTTGAGTGTTCATTTGCGTCCTTTATAACCAGTAAAACAAAGTACGCTGTTTTCTTGAGTTTTGTGAGCCCTGTAGCAAATTATCAAACCTGAGTAGGGCAGTGGGAACTCGGAATTTATCACCATTCAGAACTGCAGGTTGTCCTTGTGAGTGGCATCTGATGTGGGGGAAGTCTTGGACTGAGCCCCTTAACTTGTGGAGTCTGCACTAATTTAGACTGCACTAACTAACTTGCACTGCACTAACTTGGACTGCACTAACTTGTGGAGTCTGCACTAACTTGGAGAAGTTAGTGTCAGAATTGAATTATAGAACACCCAGTTGTTCAGAATTGAATTGTAGAACACCCAATTGGTGTGGGAGAATTAGAGAATTTATTTGTGTCAGAAAATACTCCAGAACAACCACCCCATATTATGATTAGCTCTTTTCCTTTCTTTGGCTCTGAGCTTAATTGTACATTAAGCAAACTTAAGTAGAAAAGAAACTGAATATGTTAAATATATTAACAACATATTTGGACTTGCTTAACTAAGATTATAGAGATGATCAGTTTATAAAACCACCTTCAACTTAAATAAATTTGAACTCGAAATTGCAAAAGCAGTCTAGAGGCTTTGCTAGTATCCTTCAACCAATTTCTAGTAAAAATATCCTATATAACCATAATTATCAAAACCAGAAAAACAACATTGGTAGGATACTATAAAGTACTAATCTTATTTTGGATTTGACGAATTTTTACATGTTTTTTTCTTTTTTAGTTTGTACTCTAAGAAGTTGTATTACATGTACAGATTCGTGTAACCACTGCAACCACATAAAACTAATGAACACAAAGTCCCTCATGCTACCTTTTTATGCTTACACTCCATCCAAACCTAACTCTGCCAACCACTTTTCTCCTATCAGTATAATTTCATCATTTCATGAATATGATAAAAATAAAATTGTTTTTGTAAATGGTTTTTATAAATTTTATATAAATAAGTTATATGAATTTTTATTGATAGAGAGTATGTAAGCTTTTGGCATTTTTGTCACTCAGCAAATTACTCCTAAGGTTTATATGAGTTGATGAATAGTTGTTTTATTATTTTTTTTTACCACCATGTATCTAACCAGATGAAAGTTGTTTATATTTGAGAGTAGTATACATATTTGATGTAGTAGTTTATCCATTCACCTATGAGATATATTTGCACTGTTTTCCTGGTTTTAAGTGCTATAAATAAAGATGCTGTGAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142556-ZNF614:NM_025040:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTTGGCACATGGACA
R:
TGCGTACGTTCATGCTTACCA
Band lengths:
351-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)