BtaINT0165814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038487 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr18:58135382-58141877:+
Coord C1 exon
chr18:58135382-58135474
Coord A exon
chr18:58135475-58140186
Coord C2 exon
chr18:58140187-58141877
Length
4712 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTCTTCTCTTCTTTCCTAGAAA
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTATCAAGCCAGCAAGCCAGCTGCTCTCTCCAGATTGGAACGAGGAGAACTGTGGCCCGTGGAAGACAAAGTCCACAGTCGAATCTGTCCAG
Seq A exon
GTGAGTGAGAGCACCAGCACTGGGTTGGCCGCAGGACTTACGTTCTCATCATTCAGAGATGTCACAGCCATGAGCGTCTGACAACATGGAAGCCAAGCTTCCACGACGCTCTCATAGAAGAGCTCTTTATCTTTTAGGCGTGTCAAAGAATGTCTCTGTTCTTGGATTTCATCCCTGTTTATTTCATCTTGATCTTGATTTTTTTTTCTCTTAAGTTTCTGTTTAGAATTCTCAAATCTTCCTGTCCTGTCCCCAGCACTGTATCACTGACGGTTTCTTCTGCTTTCCTTGCTATGAAATTATACCTTCCACGCCTCTCTCTGAAGAGACATGTTTAATTCTTTTTAAAAAATTTTGGCCACACAATTTTTTAGTCAGAACTTGTTTTAGGGAAATTTTTTAGTTCCCTGACCAGGGATCAAACCTGGGGCCCCTGCACTGGAAGCCTGGAGTCTTAACCACTGGACCACCAAGGAAGCCCCAAGATTTTTAGCACTATCTTCTGGCGACTGCACCTTCTTGCCCCTTTGGATAATATTTATTTCCAGTCCTAACATTCACATCATCTTTGATTGGCAGATAGGGTTTCAACATATAAATTGTGGAGGGAGGAAAGATAAACCCTTAAGGCAGTCTCTGGAACCTTCGATTTTTTTTCTTCATAGATGTGTGTTGGGAAAGCCTCGGTCTTCCTGTGTTTCTCCTCTGTTCTCTCACCGCTGCTACACTCACAGCACTTCTGACATCAGATATGTGTTGGGTTTTTCCCCATAATAAGCAGTTCTCTGCGACACCAGCTGTATGTTTGTGTGCTCAGTCGTGTCTGACTCTTTGCAACCCCATGTACTGTATAGCCCAGCAGGCTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGAGGGTTACTGTTTCCCTCTCCAAGGGATCTTCCCGACCCAGCGATCTAACCTGCATTTCTTGCATCTCCTGCATTTGTAGGTGGATTCTTTACCACTAGCACCCCCTGGGAAGCCTGGCACCAGCAGAATGTCGTACAATTTAACTCAGTTCTGACACTGTCTTCCTGGAGAAGCATCAGATCCCACAGGTTAAGGGCTCCATCACACCAGACACCCCCCCTCAACTCCACTTCCAAACACAAGTCCAGGTTGTACCCTTTGCTTCTGACTCACTTGCTCTAGACTGGGGCTTCCAAAGACTCCCCCCTCAGGTTCAATTCATTTGTTGGAGCAGCTCACAAAACTCAGAGAACCATTGCACTTACTAGATCACCAGTTTGTTATGAAAGGATCTAAGTCAGGAACAGCCAGATGAAAGAGGTGCCCAGGGCAGGGTGTGGGGAAGGGGCTGAGGGACTTCCACAACGTGTCTAGGCATAATGCTCTCCCATCACCACCATGTGTTCAGCCACCCAGAAGCCCTCTAAATCCTGTAATTTGGTTATTTTTATGGAGACTTCATCCCCCTAGGCATGATTGATCACTGACTTTGTCTCCAGCCCTTCTCCCCTCTCTGGAGAATAGAGGTGGAGGTGAGACTGAAAATTGGATCAGATCCAAGCATCTGATCGGGGTTTGGTCTTTCTGGTGACCAGCCCTACCCAGCATCCCCCACCCAAAATATAGGTGAAATAGAGCTTACAAAATGACATAGAATGAGAAGGCAATAGCCTGATACATAAAAGGCATAGGTGGGATTTAAGTAAAGATGATGGAGACCAAAGAATGAAGGTATGAAGTTGGAAACATGCTAGGTCTTGAGGGAACTGTTGAAAGATTAGCCTGAAGCCCCTTGAGGGCCGGTTTTAGGAGGTAATTGTACAGGAACAAGTGGAATGTGTACATGGATAAATAAAGTAAATGTTGGTCATATAACTTTTATCTCCAGGCTAACTGTTCTGGTCTTTGTTAGTAGAGTTGACCCTGAATAACACAGGTTTGAATGGGTCCACTTATATGTGGAATTTTTTTCCATAAATATGTAATAGAGTGCTATGCTATCTGAGGTTGCTTGAATCCTTGACTACAGAGGGATGTCTATAAAGTTGATCTTTATAAAGTTAAATTGGATCTTGACTTCGAGGAGGGTCTGTACCCCTAACCCCGTGTTGTTCAAGGGTCAGCTATAATTGAGGTATAGTGGTGGCGTTATGAGTTTGGTTTATATTATCCTTGGATATGTAGTCTTACTTTTTAATTGGGTGGCAGTAGTGTGAGCTGTAGTTAAGTACATCCAATAGTTCTGAGACAAATGGCAGGTGAACTGTCAAGAGTCCTGAGATCCAGTAGTGTGATCCTTTAGGATTCCTTAAATGATGGAAACCAGGATGAATATGTAGGCTGTTGAAAGAAAATGCTGTTAGTGGCAAGAGGTGGGCTTAGGGTTTGTTACAATGAAATGGAAACAATTTGGATATTAACATGTGTACATGTACAAAGGGTAAAAGAAAAAGGTGCCAGTTCCCTAGTATGAAATTGTGATATAAGATACATATATATCTTGGTCTTTGACCTTGGTTTAGCGGTCCTAAAACCCTTGTAGTTTCCTGAGTACAGGACTGCTTATTTCCCTTATTAGTATCAGTATAGTCAATGTTGAGTGCTCCTCACTGGGCTTTTTAAAACTCAAAGTCGTAAGACTTTCCTGTTGGTCCAGTGGCTGGGTCTCTGAGCTCCCAATGCAGGAGGCCTGGGTTTGATCCCTGGTCAGGGAACTAGATCCCACATGCTGCAACTTAAAAAAAACAAAACAAAAAAACTATATGCTGCAACTAAGACACAGTGCAGCCAAATAAATAAATAAATATTTTGAAAAACCCCCAAATCTTAATGTTACAAAAACTATAAATTTCAACCCATGCCTTCATCTACTTTCAGTCTACACTTTTTCCCAAATATCTCATCCTATCCCCTATCCTTATATAATATTTATATACAGATGATTCCCACAGTGTTGTCTTCAGTGAGGACCTTTATCAGGATCTGTATGTTCAGTTGAATTTTTCATGTCTGCTTTGAATATCCAGAACCTACCTGAAGGTTGATACGCTTTGAGATGCACACTTGATTTAGCAACATTGTAAACCTCAGTGATAGTCCCCATCTCATTAAAAACCACTACTCATCTATCCAGTGGCCTAGGTCAGGTAATTGGGAATAACACTTGATTCTTTACATTTATCATAGCCACCATGAATGAACCTTGTTTTTTCTTTCTCTAGATTATATCCTAATTTTTTCCACCTGGTTCTCTATTGCTTCCTCAAACCACTTTTCACAATTTGCTCCTGCCTTCTTAATTGTTGCTTTAATGTTCAGTTTTACCCTAACTGGAATTTATGCTTAGTGACAATAAGGACTTTGTTTCTATTTCCTCATCACTGGCATAATGCTTGATACATAGCCATAATTTAATAAAGATTTATGGATGTATGAAAGTGTGCCACATCATTTGGAAACAAATAGCCCTCTGTCTTTGTTGATAATGAAAGTGAAAGTGTTAGTCACTCAGTTATGTCTGACTCTTTGTGACCCCAGGGACTGCAGCCCTCCAGGCTCCTCCATCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCACTTCTTGGTCCAGGAGATCTTCTTGACCCAGGGATTGAACCTGGGTCTCTTGTGTTGCAGGCAGACTCTTTACTGTCTGAGCCTCATAATAACTTGATTTTATTTTACTATCAGCATACTTTGTAAGTTCACAATTACGAAACAGCCAAATCTGTATTTGCTCATTTTGAATGCTCTAACCTCATTTGTGCCCTATTTTACCCTTTATTTTACCCTTTATTTATATTATTGTGTTGTACTCTTGTCCAGGTAATAACAAACATATTTACTTGAAGTTTATTCCTTTTTTTTTTTTTTGAGTTAAGGTATAGTTGATTTTCAGTTTTGTGTTAATTTCTGCTATAAAGTGTTTCATTCTTTTTCATATTCTTTTCCATTATAATTTCTCACAGTATATTGAATATAATTCCCTGTGCTATACAGGAGGACATTGTTGTTTATCCATCCTGTTTATAATAGATTACATCTGCTCATCCCAAACTCCCAATCCATCCCCTGCTTCCCTTTTGGTAACTACAAGTCTGTTCTCTATGTCTGTAAGTCTTTCTGTTTCATAGACAAATTCATTTGTGTCATATTTTAGATTCCACATATAAGTGATATAATATCTTTCTCTTTCTGACTTACTTCACTTAGTTTGGTAATTTCTAGGTCCATCCATGTTGCTACAAATAGCATTATTTCATTCTTTTTTTATGTCTGGGTAGTATTACATTATGTACCACATCTTTATCCATTTGAATGCTGATGGACATTTAGGTTGTTCCATGTTTTGGCTATTGTGAATTCTGCTATGAACATAGGGGTGCATGTATCTTTTAAAATTATAGTTTTTTCAGGTATATGCTCAAGAGTGGGATTGCTGGATTGTATGGCACTATTTCTAGTTTTTTAAAACCTTCATACTGATTTCCAGAGTGGCTACACCAATTTAATTTACATTCCCACCAACAGTGTAGGAGGGTTCTCTTTTCTACTTGGAGTTTCTTTAAACTGAGGTCATAGTATTGTCTGTAAAGAGCCCACCTACCCAAAGGCATTTGTTAAACAGTTTCACTCTGTACCAAGTTCATGGGAAGGTTCATTCTTCTCTTCTTTCCTAG
Seq C2 exon
AAATGAGGAAAGATGACTGTCTTCTACAGGAGAACTTGCAAAATCAAAGCTGTCCAAAAAGAATGGAACGATGTCATGAACATAATGCACTTGGAAATGTTTATCAGAGCAAAAATCATTGTCCTTTATGGCAAAATCATGATGTACTTTACTTACATGGGAAAACACTGAAGTCAAACTTAAGTTCAATCAGCCAGAACAGAAACTATGAAGTAAAGAACCCCGTTAAGGCTAATGTAAATGGGAAATTCTTCCTCCATGCAAAGCATGAGGAATTTCACAGTGAAAGTAAGCTTCCTGAGTGTGGAATTCCCATGAACACAAATTCACAGATCATTACATGTCTAGGAACTCAACAGATAAATAAACCTCATGTTTGCACTGAATGTGGGAAAGCCTTCATCAAGAAGTCCCGCCTCATCGATCATCAGAGAGTTCACACAGGAGAAAAACCCCACAGATGCAGTGTATGTGGGAAAGCTTTCTCTAGAAAGTCTAGACTCAATGAACACCAGAAAACCCACATAGGAGAGAAACAGTATGCATGCAATGAGTGTGACAAAGTCTTCCCTAAGAAGTCACGGCTGCTTATCCATCAAAAAACTCATACAGGTGAGAAGCCCTACATATGCGACGATTGTGGAAAAGGCTTTGTCAAGAAGTCTCGGCTCATTAATCATCAGAGGGTTCATACAGGAGAGAAACCTCATGGGTGCAGCCTGTGTGACAAAGCATTCTCCAGGAAGTCCAGGCTCATGGAACACCAGAGAACTCACACGGGAGAAAAACCTTATGAATGCACGGAATGTGACAAAGCCTTCCGCTGGAAATCGCAGCTCAACGCACACCAGAAAACTCATACAGGGGAGAAATCATATATATGTAGCGATTGTGGAAAGGGCTTCATTCAGAAGGGCAATCTCATTGTACATCAGCGAACTCACACTGGAGAGAAACCCTATGTATGCACTGAATGTGGGAAAGGCTTCATCCAGAAAGGCAATCTCCTGATACATCAGCGAACTCACACTGGAGAGAAACCCTATGTATGCACTGAATGTGGGAAAGGCTTCAGCCAGAAAACCTGCCTCATCTCGCATCAGAGATTTCACACTGGAAAGACTCCCTTTGTGTGTACTGAATGTGGAAAATCCTGTTCACACAAGTCAGGTCTCATTAACCACCAGAGAATTCACACAGGAGAGAAACCCTACACGTGTAATGACTGTGGGAAAGCATTCAGGGATAAGTCGTGTCTCAACAGACACCGGAGAATTCACACAGGAGAGAGACCCTATGGCTGCAATGACTGCGGGAAAGCTTTCTCCCACTTGTCATGCCTTGTGTATCACAAGGGGATGCTACATGCAAGAGAGAAACGTGGCGACTCAGTCAAGTTGGAAGATGCTTTCTCAAAGCATCTCAGCCCATCACATCCAAGTGATATGGTACAGAGGAAAAGCCCTGTTAGTGTGGTGACTGTGCAGATGCCTTCTGTGGCAGTTCAGACTCCATCCCACAGTAATAAGCCCCTAGAAGATAAGAACATACCCCTTGTGGGACAGCTAGGCGGCAGATATGCACCCTCAGCAGGTAATAGAATTCGCACAGAAGAGAAACCTAGTGAATGTGGTAGCACCCTCAGTGGTCAATTATGTCATATTTTTGTCACAAAAGACACACAGGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038487:ENSBTAT00000052047:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development