HsaINT0187867 @ hg19
Intron Retention
Gene
ENSG00000176024 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:25827]
Coordinates
chr19:52443870-52449011:+
Coord C1 exon
chr19:52443870-52443962
Coord A exon
chr19:52443963-52447371
Coord C2 exon
chr19:52447372-52449011
Length
3409 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTGTTCTCTTCTTTCCTAGAAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGTATCAAGCCAGCAAACCAGATGCACTCTTCAAGTTGGAACAAGGAGAGCCATGGACAGTAGAAAATGAAATCCACAGCCAAATCTGTCCAG
Seq A exon
GTGAGTTCAGGGTGAGAGCCAGCAAGGAGGGTGGCTGAGCAAGTCACATGATAGTTGTTCAGCAGTGTCTGAGCTGTCAGGGCATCTGAGGCTGTGTGGACAGAGCCTCCATGTATCCCTCTCCCCACACAAAAGCTCTTTCTCCTTCGGGTATTTAGAGGAACATCTGCTTCGTTATCGCGTCTTGGATTTCATCACTGTTTATTTTTTATTTATTTTATTTTATTTATTTATTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTAGAGCCCAGTGGTGCAATCTTGGCTCACTGCATCCTCTACCTCCCAGTTCAAGCGATTCTCCTGCCTCTGTCTTCCCAGTAGCTGGGATCACAGGCACCCGCCACTACGCCCAGCTAATTTTTTTGTATTTTCAGTGGAGACGGGGTTTCACCAAGTTGACCAAGATGGTCTCAAACTCCTGACCTCTGGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCCGGCCTCATCACTCTTTATTTAATCTAGGTTTGATTTGTTTTTCTCAAGGTTTCTTCCTTTTTAGGATTCTCAAATCTCATCATTTCTTGTTCCCCCATCAGAGCATCACTACCTGTTCCTTCTACTTCTCTTGCTATGAAATTCCTCCTTCCATGTCTGTCTCCAAAGAGTGGTCTTGGATATCAGCACTCTCTCCTGACCACTATACCTTTCTGCCCCTTTAGATAATGTTGATTTTTTTTTTCCAAAGGTCTTCCCACCCTATCTTGGACTCTGTGCCCCCTTAGTAACCTGGTCTGTTGCTTTGCATATATTTGCTTCCTTAGCTTCTCTTTTTTCTCCCACTCTGAGGTCCTCCAGAGGTTCTGTTTCCCATTTATTTTGCTCTGTTCTCATATCCTTTAAAAGTTTCCTTCATTCTAATGACTTAAGTTCTTGTTCTCTATGGAGATTCTCAGATTGACATCTCCCTTAATATTTCCTAACTTACATGTTTGTACCTATTTTTTACCCACTTGCATGTCAACTCCTTGAGTCGATCCTGGCCACCACAGGGTTACCTTGAAACTTCCCTGCCTCCTCAGCTACCGTATTTAAAGTCTTTGCTCTTTCAATTGATTTTTGAAGTAGTCTCATTCTCTTTCCAACCCAAACCAGATTACTACACCTCATGCCTGCTTTGCTTCAATTTCCTTTTGGAATCATTAATTCTGCCTATTATTTAGTTTCTCTTAAATTATATTGCTGGACTTATTCCCTTAAAGCTTTTCTGTTCTTACCATAGTCTGATGGCACTGAGTCCCAGTGAATCATAGCAGTCATATAAGATGGAAATTTCTCATCTGTCAGGTGATATTCTAGTTGAATCACCATGATATGGTATCATCTTGCCTACACAGAGTTTGTTTTCCTTTTCCTTTTCATAAATTCAAAGCCAACTATATATAAAGCACTACATTTGAAGTAGTTTCCGCAGTGTGTCCCTTACTTTCCTTGTTTCATTGCCTTAAATATTTTTTGATAGACTATTACATATGGGCCCTGACAGCTGTGAACATCAATAACAACAACAAAATTCTTCTTGGAGATTACCTGCTAAAAGGAAGAGGCACAAAATTAATCAAAATGGATAAATGTCTTGTGGTGAAAAATGCTGGGAAGACCAATAACAAAGTATAATGAGGGATGCCGGGAGTGGGAATGGCTGTTTGGTCAGATGCCTTTGAGCAGCTGTATGACAGACATGAATACGTCCCCCTGGTGAATTACCTTCCAAGTAGACAAAATAGCAGGTCCAAAGGCCCAAGGCAGGTGTGTGTTTGAGGAACTTCAAGGAAGCCTGTGTGAATACAGAGGAGTGAACAAGAGGGGCAGTGGTCGGAGATAATACGGAAGTAAGGACAGTGTGGTGGGATCTGGAGTTTGGGGTAGACAGGTCATGTATGACCTTTCAAGGACATTTTAATGACTTGATTTTTTTTTTTTTTTTTGGCACAGAGTCTCTCTCTGTCTCCAGGCTGGAGTGCAGTGCTGTGATCTCAGCTCACTGCAACCTCTGCCTCCCTGGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGTCGCTGGGACTACAGGCGTAAGCCACCGCTCCTGGCTACTTTTTGTATTTTTAGTAGAGACAGAGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCCTGACCTCATGATCCACGTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCATCCGGCCATGACTTGATTTTTTAAAAAATTATGAGATGAGGAAACATGAGGGAGTTTTGAGTAGAAGAGTGACATGATGTCATTTATATTTAAAAGGATCACTTTGACTACTTTGTAGAAAGTATACAGGAGAAGGCAGAGGTTGAAGCCTGAAGTCCACTTGGGAGGCTATTGCTATAGTACCAGAAAGAGTGATTCTCTTCCATCTAGGTAGAAGGGGTGAGTGTTAGTGAGTTTCAGAATACAGGAGTCCCCTGTTATCCACAGTTTCTCTTTCTACAGTTTCAGCTACCTGTGGTCAACTATGGTCTGAAAATGTTAAATGGGAAATTCTAGAAATAAACAATTCTTAATTACATTGCTCACCATTCCAAGGAGCATGAAATCTTGCACCATCTTGCTCCATCCTGGAACAGGAATCATTTTTTGTCCAGCATATGCATGCTGTGTACCCTACCCACCTGTGTCACTTAGTAGCCATCTTGGTTATCAGATCAACTGTCAAGGTATCACAGTGCTTGTGTTCAAGTAACCTTTGTTTTACTTAATAATGCTTCCAAAGCTCAAGAGTGTGATGCTGGCCTATTGTTATAATTCTTCTATTTTATTATTTGTTATTGTTAATCTCTTGCTGTGCCTAGTTTGTAAACTTTATTATAGGTATGTATGCACTGTACAGGAAAAAACATAATGGATATAGGGTTAAGTATGATTCAGAGTTTCAGGCATCCATGGTGTGGGGGGTGTCTTGGAACATATCGCCCATAGATGAGGGATTACTGTATATTTATAAAAGACATAAGGAATTTACTACTGAAGTAGACAAAGGGTGTGAGACAAACATACAAATGAAAGATGATAGTAAGGTTTCTGGCATGAGTCCGAGCAGGAATTAACTTGCCATTTCCTGAGAAATTTACCTTGTTTATACACTGACTGCTTTTATTTTTTGTTTTCTTTGTTTAAATTATAATGGTTTATTCTTGTCCAAGTGACAATAGGCATATCTACTTGGAGTTTTTTAAACAGTGGAAATAGTGTGGTCAGTAGAGCCAGCCTGTACAAGACTGTTTGTGAAATAGTTCTATTCCATGCTCATGGAAAGATTTATTGTTCTCTTCTTTCCTAG
Seq C2 exon
AAATCAAGAAAGTTGACAATCATCTACAGATGCACTCACAAAAGCAAAGATGTCTGAAGAGAGTGGAACAATGCCATAAACATAATGCATTTGGAAACATCATTCATCAGAGGAAAAGTGATTTTCCTTTAAGGCAAAATCATGATACATTTGACTTACATGGGAAAATACTGAAATCAAATTTAAGTTTAGTCAACCAGAACAAAAGGTATGAAATCAAGAATTCTGTGGGGGTTAATGGAGATGGGAAATCCTTCCTTCATGCCAAGCATGAACAATTTCATAATGAAATGAACTTCCCCGAAGGTGGAAATTCTGTGAATACAAATTCACAATTCATTAAGCATCAGCGAACTCAAAACATAGATAAACCCCATGTATGCACTGAGTGTGGGAAGGCTTTCCTCAAGAAGTCTCGCCTCATCTATCATCAGAGAGTTCACACTGGGGAGAAACCTCATGGATGCAGTATATGTGGGAAAGCCTTCTCCAGAAAGTCCGGGCTCACTGAACACCAGAGAAACCACACAGGAGAGAAACCCTATGAATGCACTGAATGTGACAAAGCATTCCGCTGGAAATCACAGCTCAATGCACACCAGAAAATTCATACAGGAGAGAAGTCATATATATGCAGTGATTGTGGAAAAGGCTTCATCAAGAAGTCTCGGCTCATTAATCATCAGAGAGTTCATACAGGAGAGAAACCACATGGATGCAGCCTGTGTGGGAAGGCCTTCTCCAAAAGGTCCAGGCTCACTGAACACCAGAGAACTCATACAGGAGAGAAACCCTATGAATGCACTGAATGTGACAAAGCATTCCGCTGGAAATCACAGCTCAATGCACATCAGAAAGCTCACACAGGAGAGAAGTCATATATATGCCGTGATTGTGGAAAAGGCTTCATTCAGAAGGGAAATCTCATTGTACATCAGCGAATTCATACTGGAGAAAAACCCTATATATGCAATGAATGTGGAAAAGGCTTCATCCAAAAGGGCAACCTCCTTATTCATCGACGTACTCACACTGGAGAGAAACCCTATGTATGCAATGAATGTGGGAAAGGCTTCAGCCAGAAGACATGTTTAATATCCCATCAGAGATTTCACACAGGAAAGACACCCTTTGTATGTACTGAGTGTGGAAAATCCTGCTCACACAAGTCAGGTCTCATTAACCACCAGAGAATTCACACAGGAGAGAAACCCTATACATGCAGTGACTGTGGGAAAGCTTTCAGAGATAAATCATGTCTCAACAGACATCGGAGAACTCATACAGGGGAGAGACCGTATGGATGCTCTGATTGTGGGAAAGCTTTCTCCCACTTGTCATGCCTTGTTTATCATAAGGGAATGCTGCATGCAAGAGAGAAATGTGTAGGTTCAGTCAAATTGGAAAATCCTTGCTCAGAGAGTCATAGCTTATCACATACACGTGATCTCATACAGGATAAAGACTCTGTTAACATGGTGACTCTGCAGATGCCTTCTGTGGCAGCTCAGACCTCATTAACTAACAGTGCGTTCCAAGCAGAGAGCAAAGTAGCCATTGTGAGCCAGCCTGTTGCCAGAAGTTCAGTCTCAGCAGATAGTAGAATTTGCACAGAATAAAAACCATATGAATGCAGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176024-ZNF613:NM_024840:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)