MmuINT0179265 @ mm10
Intron Retention
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12978998-12979646:+
Coord C1 exon
chr7:12978998-12979378
Coord A exon
chr7:12979379-12979450
Coord C2 exon
chr7:12979451-12979646
Length
72 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTGACATGATTCTCTTCAGATC
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTCCCTCTGTCACCTCCAAAAAGACCCTTCAAAACAAGAATGCCATCTCCTCGGGGTACCCCACACCTATCCCTCAGAGACTCCAGGACCACCCTTGAGGAGCCTGAGGCTGCACGACTCCGTTTCCGGGGTTTCTGCTATGAGGAGGTTGAGGGACCCCGAGAGGCACTGGCCCAGCTTCGAGAGTTGTGTCACCAGTGGCTACAGCCTGAGTCATCCTCCAAAGAACACATAATAGAGTTGCTGATTTTGGAACAGTTCCTGGGTGTGTTGCCCCCTGAGATCCAGGCCTGGGTTCGAGGGCAGCGACCAGGAAGCCCCGAGGAGGCCGCAGTTCTTGTTGAGGGGCTGCAGCATGATCCTGGGCAGCTGCTGGGCTGG
Seq A exon
GTGAGTGAAATGACATTAGCTTCTTAGAAGGACAGATCGAAGGGAGAGCCCCTGTGACATGATTCTCTTCAG
Seq C2 exon
ATCACAGCCCACATCCTGAAGCCAAAGATGCTTCCTCTAGTCCAGAAGGAGTCCTCAGGGAGTCACCACATCTCAGCAGCAACGGAGTCCTCCAAGGCAGGCCTTGCGGAGGCACCGCTGAAGGCCGGGATAGATCGATCTACCCAGATCAGTTGCAGTGTGAAGGAGGAAGTCAGTGCTGATGGGCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961:ENSMUST00000045810:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0202312=SCAN=WD(100=73.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATCCAGGCCTGGGTTC
R:
GCTGCTGAGATGTGGTGACTC
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types