MmuINT0179268 @ mm9
Intron Retention
Gene
ENSMUSG00000073176 | Zfp449
Description
zinc finger protein 449 [Source:MGI Symbol;Acc:MGI:1925869]
Coordinates
chrX:53601460-53606844:+
Coord C1 exon
chrX:53601460-53601905
Coord A exon
chrX:53601906-53606639
Coord C2 exon
chrX:53606640-53606844
Length
4734 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTCTGGCCTCTCTCTCAGATT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CTGTAAGTGACTCCCCCAGATTATTACAGAGAGGAAAAACCTGGACTCTGAGACATAGACCCCAGATAAACTGTAAACTGCTAGAAGAGGTGATGGCTGTGGCCCTGGGCTGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACACAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCTGCCGGGCCTCATGAAGCATTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTGGAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACTGCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACCACAG
Seq A exon
GTGAGAAAAAAAAATGTGGGGTCTCTGTTCTTAGGGGAGCAAAAAGAGGTACCCAGGCTGTTGAGTCTGTATCCAACATTTGGATTCTGATCCCACAGCCCCAAGACTTCTCCAGAGACTTTTCCAGTGTTCTCTTCTGCTGGAATTAGCATATGGGTCTGAGGTTCTCCAGTGTATCCATATCTAGAAATTTCAATCACAGTTACCAGTGCTTGGCTCTATGGCGTGCTCACCAGCTCCTGCCACAGTATAATTGCCTGTGACCTCTAAGTTCCTACTTGTGTCGCCCTTGTAAATGAATTGCTTTTCAAAACAGAAGGAGGAGGAGAGGAAAGAGTTAAGTGCGGCCCACACATTCTAAACTATGTATTATTTGGTTCTTTCCAGAATGATCTGTCTGTCACTGAGTCAAGTAGAGTCTGGAAAGAATGCAAGGGAAGGCAACATAGTTTAGTGTCAACTGATACACTTTTTCTACAATATGTCTGTTCTTCAGGGGAAGACATCATGAAGTGGTCACACGCCAGCCCCTCTGCTTTCAATTACTGTGTTGGGAGAAGCAGGAATTCTGCCTGAAGTTCCAGGGCTTTGAGCAGTGTTGTCCCCAATGATGTGATTTTTCAAAATGGCAAAAAAAATGCGTTTTTTTCTCTGATTTGTGCAAAAGTGATAAAAAAAATATGCAAAAGTTACTTAGTTTCTACCTGATTAGCAGGGTGTGGTTCTTGCTAGGTTCTTTTCATCTACATGTAGGTTTGAAGGAGTTGCATGTTTGGGAGAGTGTAGGAAGAGATCTGCATTGTAAGCGATGTGCTGCCCGTCTCTGACCCATTCAATTCCAGTAGCACTGCATGCCAGCATATTGCCTTCTGTTCAGAACTACCTTTTGGAAGCTTCTATTCAGGGAGGGCATAGGTAAGCACAGGGCAAGCTGAACACAGAGCAGTCTTCCCATAAGGACGTAGCAAGAGCTTCCACCTGGCAGTCTTAATTAGGCCTTGGAGCTTGGGATGGGGTTTGCTGGAGCTGTTGACTTCAGCCCAAGTAGCGGCTTGCATAGGAAGTCACCTGGTATGTGAGTGCTTACAATGTAGCCAGTGGGGCTGAAATTAGCTGTGAGTATCAAATGCATACTCCCTGTAGAGACTTTGTACACAGGAAGGAGCAGGTGGAATAACTTGCTAGTAATTATTTGTGTTGGTTACTATTGTATATTCTGTAATAAGCACATCCTAGTATAGTCAACACACTTGTTTTGTTGGTTGGTTGGTTAGTTGTTCATTTTTTTTCTTTTATTAAATTTATCTATTCATGTTACAACCCAGTATCAGCACTTTCTCTCCTCCCATTAACCCTTCATGTAAGTCCTCCCCTGATTCCCCTTAGAAAAAGTCCCTCTCTGGGTGTCAACCCCCCACTATCATCCTCCCACACCTCCCACTTCCCCACCCTGCACATCAAGTTGCTGCAGGAATAGGCGCATCCTCTCCCACTGAGGCCAGGCAAGGCTGTCCATGTAGGGGTGCAGGATCCACAGGCAGGCAGGCAGGCAACAGGCTCAGGGACAGCCCCTGCTCCAGTTGTTGGGGGACCCATATGAAGACCAAGCTGCTCATCTGTTACATATGTGCAGGGGCCTAGGTCCAGCCCCTGCTTGCTCTTTGGTTGGTGATTCAGTCTTTGTTAGCCCCTAAGGGTCCAGGTTAGTTGACTCTGTTGGTCTTCCTGTAGAGTTCCTGTCCTCTTCAGATTCCGCAGTCTTTCTCCCAACTCTTCCGTAAGATTCCTGAGCTGCATCTGTTTGGCTGGGGGTTTCCGCATCTCTTTCCATTGGGTGCTGGGTGGAGCCTCTCAGGAGACAGTTATGCTAGGTTCCTGTCTGCAAGCATAACAAAGTATCATTAATAGTGTCAGGGATGGGATGGGTCTCAATTTGGGGCAGTCATTAGTTTGCCATTCCCTCAGACTCTGCTCTTTGTCCCTGCATATATATATATCTGGTGTTGTTATTGTTGTTGGGTTTTTTTTTCTCTCTGTATACCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGTCCAGCATTCCTGCATATCTCATAGACAGGACACAGTTTGGGCCAAAGGTTTTGTGCGTGGGTTGCTGTCTTTATCTCTCCACTGGGGGTCCTGCCAGGCTACAGGAAGTGGTCACTTCAGGATCCATATCCCCAACTGCTAGGAATCTCAGCTAGAGTATTCCACTTAGACCCTCTGGGCCCTTCCCCCATCCCAGGTCTCTGGCACATTCTAGGGATTGTCCCTACCCCCCAACCAATCTTGCTTCTCTCTCCCCTGTTCCCCCTACATATGATCTCTTCTCCTTGCCCCGCTCCCCTCACCATCCCCTCTTCCACCCTCTTCTTCCTTTCCATTTGTTTCCCTTCTGAGAAAGATTCAACTATTCTCCTTTGTGTTCTCCTTGTTATTTGGCTTCTTTGGGTCTGCTAATTATCCTGTAGTTTATGGCTCATATTCACTTAGCAGTGAGTATATACCATGCATGTCCTTCTGGGTCTGGACTATCTCGCTCAGGATGATATTTTCTAGCTCCATCCATTTGCCTGCAAAACTCATAATGTCCTTGTTTTTAATGGCTGAGTAGTATTCCATTGTGTAGCTATACCACATCTTCTATATTCTCTCTTCAGTTAAAAGACATCTAGGTTGTTTCCAGTTTCTGGCTATTACAAACAGAGCTGCTATGAACATAGTTGAACAACTGTCCTTGTGGGATGGTGGAGCATCTTTAGGGCGTGTGCCCAGGAGTGGTGCAGGTGGGTCTTGAGGTAGAACTCTCCCCAATCTTCTGAGAAACCACCACATTGATTTCCAGAGTGGTTGTACAAGTCAGCACTCCCACCGGCAGTGGAGGAGTGTTCCCCTTGCTCCACAACCTCACCAGCTAAGCTGTCCTTTGAGTTTTTAACCTTAGCAATTCTGATGAGTGTAAGGTGGACTCTCAATCGTTTTGATTTTCATTTCCCTTATAACTAAAAAAGTCAAACATTTCTTTTTTATTTTATTTATTTATTTATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCCAGCATCATTTTTATTTTTATTTTTTGTTACTGTTATATTTTTACAGCTCAGTTTTTACCCTCCTTCTGGTCACCCTCCCACAGTTCCTCATCCTATTCCCCCTCCCCCCTTCTCCACAAGGATGTCCCCACTCCCATCCCCTACCCCCTACCTCCCACCCCACCAGACCTCCCCACTCTCTGGGGACTCCAGTTTCTCAAGGAGGACTAGAAACATCTTCTCTCACTGAGGCCAGAACTGGCAGTCCTCTACTGTGTATGTGGCAGGCAGCAGGGAGGGGGCCTCATATCAGGTGGTGTATGCTGACTGGTTGGTGGCTCAATGTCTGAGAGATCTCAGGGGTCCAGGTTAGTTGACATTGCTGGTTTTCCTATGGGGTCACCCTCCTCAACTTCTTCCAGCCTTTCCTTAATTCAACCACAGAAGTACTTAACTTCAGTTCATTGGTTGAGTGTAAGTATCTGTGTCTGTCTCAGTCAGCTGCTTGTTGGCCTCTCAGAGGACAGCCATGTCTTAAAGTACTTCTAGGCCATTTGAGATTCCTCTGTTGAGAATTCTGTGTTTAGCTCTGTACTCCATTTTTTTAATTAGGTTATTTGGATTGTCTGTGTCTTCTTGAGTTCTTTATATATATTTTTATATTAGTCCTCTTTCAAATATTTCCCATTCTGTAGGTTGCCATTTTGTCCTGATGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCCTGAAGTCCCATTTATCAACTGTTGATCTTAGAGCCTGAGCCACTGGTGTTCTGTTTGGAGGATTGTCTCCTAGACTGATGAGTTCGAGGCTATTCCCCATGTTCTGTTCTAGTAGATTAAGTGTGTCTGGTTTTATGTTGAGTTCTCTGATCCATTTGGACTTGAATTTTGTGCATGGTATGGTGATAAATATGGATCTATTTGCATTCTTCTATATGCAGACATCCAGTTAGACCAGAATCATTTGTTGAAAATGCTCTCCCTTTTCCACTGTATCGTTTTGGCTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTATGGATTTACTTCTGGGACTTTGACTCAATTCCACTGATCCACCTGTCTGTTTCTATACCAATACCATGCAGCTGTATGGAGGGAGGAGCAGGAAGAATAACTCGCTAATGATTAGTTGTATTGGTTACTACTGAAAGCTGGTACTTTGTATATTCTATAAGAAGCATATCCTAGTATAGTCAACACAGCTTGTTTTGTTGTGGTTTTGGTTGGTTAGTTGGTGGTGGTAGTTTTTCTTTGTTTTTTAATGCATTGCCTACTGGAACCCCTGGGAGCATTAAAGCTATGTGTTTGCCTCATGGTACTTGTTGGTGAGGAGTGTCTGACTTCGAAACTAGCCTTCCTTCCAGTGAAGTCTTGACTTTGGAGTGATGTGTTCTGGCCTCTCTCTCAG
Seq C2 exon
ATTGACATGGATGACATGCTCTTGGAAGAACTGGCGCCAGTTGGAACAGTACCCATGCCACCCAACTTGCACCTGGAGGAGCCTTCACTCCAGGTGATGGAACCTGTTCAGGAGCCTCCGGTGCCGGATGCCTGGATTCCACAAGCTGGCCCCCAGGATCTGAACTACAGTGCTGATGCTGAATGCCAGTCCTTTCTGGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073176-Zfp449:NM_030139:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=79.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: