MmuINT0179268 @ mm10
Intron Retention
Gene
ENSMUSG00000073176 | Zfp449
Description
zinc finger protein 449 [Source:MGI Symbol;Acc:MGI:1925869]
Coordinates
chrX:56348283-56353667:+
Coord C1 exon
chrX:56348283-56348728
Coord A exon
chrX:56348729-56353462
Coord C2 exon
chrX:56353463-56353667
Length
4734 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTCTGGCCTCTCTCTCAGATT
3' ss Score
10.01
Exon sequences
Seq C1 exon
CTGTAAGTGACTCCCCCAGATTATTACAGAGAGGAAAAACCTGGACTCTGAGACATAGACCCCAGATAAACTGTAAACTGCTAGAAGAGGTGATGGCTGTGGCCCTGGGCTGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACACAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCTGCCGGGCCTCATGAAGCATTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTGGAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACTGCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACCACAG
Seq A exon
GTGAGAAAAAAAAATGTGGGGTCTCTGTTCTTAGGGGAGCAAAAAGAGGTACCCAGGCTGTTGAGTCTGTATCCAACATTTGGATTCTGATCCCACAGCCCCAAGACTTCTCCAGAGACTTTTCCAGTGTTCTCTTCTGCTGGAATTAGCATATGGGTCTGAGGTTCTCCAGTGTATCCATATCTAGAAATTTCAATCACAGTTACCAGTGCTTGGCTCTATGGCGTGCTCACCAGCTCCTGCCACAGTATAATTGCCTGTGACCTCTAAGTTCCTACTTGTGTCGCCCTTGTAAATGAATTGCTTTTCAAAACAGAAGGAGGAGGAGAGGAAAGAGTTAAGTGCGGCCCACACATTCTAAACTATGTATTATTTGGTTCTTTCCAGAATGATCTGTCTGTCACTGAGTCAAGTAGAGTCTGGAAAGAATGCAAGGGAAGGCAACATAGTTTAGTGTCAACTGATACACTTTTTCTACAATATGTCTGTTCTTCAGGGGAAGACATCATGAAGTGGTCACACGCCAGCCCCTCTGCTTTCAATTACTGTGTTGGGAGAAGCAGGAATTCTGCCTGAAGTTCCAGGGCTTTGAGCAGTGTTGTCCCCAATGATGTGATTTTTCAAAATGGCAAAAAAAATGCGTTTTTTTCTCTGATTTGTGCAAAAGTGATAAAAAAAATATGCAAAAGTTACTTAGTTTCTACCTGATTAGCAGGGTGTGGTTCTTGCTAGGTTCTTTTCATCTACATGTAGGTTTGAAGGAGTTGCATGTTTGGGAGAGTGTAGGAAGAGATCTGCATTGTAAGCGATGTGCTGCCCGTCTCTGACCCATTCAATTCCAGTAGCACTGCATGCCAGCATATTGCCTTCTGTTCAGAACTACCTTTTGGAAGCTTCTATTCAGGGAGGGCATAGGTAAGCACAGGGCAAGCTGAACACAGAGCAGTCTTCCCATAAGGACGTAGCAAGAGCTTCCACCTGGCAGTCTTAATTAGGCCTTGGAGCTTGGGATGGGGTTTGCTGGAGCTGTTGACTTCAGCCCAAGTAGCGGCTTGCATAGGAAGTCACCTGGTATGTGAGTGCTTACAATGTAGCCAGTGGGGCTGAAATTAGCTGTGAGTATCAAATGCATACTCCCTGTAGAGACTTTGTACACAGGAAGGAGCAGGTGGAATAACTTGCTAGTAATTATTTGTGTTGGTTACTATTGTATATTCTGTAATAAGCACATCCTAGTATAGTCAACACACTTGTTTTGTTGGTTGGTTGGTTAGTTGTTCATTTTTTTTCTTTTATTAAATTTATCTATTCATGTTACAACCCAGTATCAGCACTTTCTCTCCTCCCATTAACCCTTCATGTAAGTCCTCCCCTGATTCCCCTTAGAAAAAGTCCCTCTCTGGGTGTCAACCCCCCACTATCATCCTCCCACACCTCCCACTTCCCCACCCTGCACATCAAGTTGCTGCAGGAATAGGCGCATCCTCTCCCACTGAGGCCAGGCAAGGCTGTCCATGTAGGGGTGCAGGATCCACAGGCAGGCAGGCAGGCAACAGGCTCAGGGACAGCCCCTGCTCCAGTTGTTGGGGGACCCATATGAAGACCAAGCTGCTCATCTGTTACATATGTGCAGGGGCCTAGGTCCAGCCCCTGCTTGCTCTTTGGTTGGTGATTCAGTCTTTGTTAGCCCCTAAGGGTCCAGGTTAGTTGACTCTGTTGGTCTTCCTGTAGAGTTCCTGTCCTCTTCAGATTCCGCAGTCTTTCTCCCAACTCTTCCGTAAGATTCCTGAGCTGCATCTGTTTGGCTGGGGGTTTCCGCATCTCTTTCCATTGGGTGCTGGGTGGAGCCTCTCAGGAGACAGTTATGCTAGGTTCCTGTCTGCAAGCATAACAAAGTATCATTAATAGTGTCAGGGATGGGATGGGTCTCAATTTGGGGCAGTCATTAGTTTGCCATTCCCTCAGACTCTGCTCTTTGTCCCTGCATATATATATATCTGGTGTTGTTATTGTTGTTGGGTTTTTTTTTCTCTCTGTATACCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGTCCAGCATTCCTGCATATCTCATAGACAGGACACAGTTTGGGCCAAAGGTTTTGTGCGTGGGTTGCTGTCTTTATCTCTCCACTGGGGGTCCTGCCAGGCTACAGGAAGTGGTCACTTCAGGATCCATATCCCCAACTGCTAGGAATCTCAGCTAGAGTATTCCACTTAGACCCTCTGGGCCCTTCCCCCATCCCAGGTCTCTGGCACATTCTAGGGATTGTCCCTACCCCCCAACCAATCTTGCTTCTCTCTCCCCTGTTCCCCCTACATATGATCTCTTCTCCTTGCCCCGCTCCCCTCACCATCCCCTCTTCCACCCTCTTCTTCCTTTCCATTTGTTTCCCTTCTGAGAAAGATTCAACTATTCTCCTTTGTGTTCTCCTTGTTATTTGGCTTCTTTGGGTCTGCTAATTATCCTGTAGTTTATGGCTCATATTCACTTAGCAGTGAGTATATACCATGCATGTCCTTCTGGGTCTGGACTATCTCGCTCAGGATGATATTTTCTAGCTCCATCCATTTGCCTGCAAAACTCATAATGTCCTTGTTTTTAATGGCTGAGTAGTATTCCATTGTGTAGCTATACCACATCTTCTATATTCTCTCTTCAGTTAAAAGACATCTAGGTTGTTTCCAGTTTCTGGCTATTACAAACAGAGCTGCTATGAACATAGTTGAACAACTGTCCTTGTGGGATGGTGGAGCATCTTTAGGGCGTGTGCCCAGGAGTGGTGCAGGTGGGTCTTGAGGTAGAACTCTCCCCAATCTTCTGAGAAACCACCACATTGATTTCCAGAGTGGTTGTACAAGTCAGCACTCCCACCGGCAGTGGAGGAGTGTTCCCCTTGCTCCACAACCTCACCAGCTAAGCTGTCCTTTGAGTTTTTAACCTTAGCAATTCTGATGAGTGTAAGGTGGACTCTCAATCGTTTTGATTTTCATTTCCCTTATAACTAAAAAAGTCAAACATTTCTTTTTTATTTTATTTATTTATTTATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACTGCCCAGCATCATTTTTATTTTTATTTTTTGTTACTGTTATATTTTTACAGCTCAGTTTTTACCCTCCTTCTGGTCACCCTCCCACAGTTCCTCATCCTATTCCCCCTCCCCCCTTCTCCACAAGGATGTCCCCACTCCCATCCCCTACCCCCTACCTCCCACCCCACCAGACCTCCCCACTCTCTGGGGACTCCAGTTTCTCAAGGAGGACTAGAAACATCTTCTCTCACTGAGGCCAGAACTGGCAGTCCTCTACTGTGTATGTGGCAGGCAGCAGGGAGGGGGCCTCATATCAGGTGGTGTATGCTGACTGGTTGGTGGCTCAATGTCTGAGAGATCTCAGGGGTCCAGGTTAGTTGACATTGCTGGTTTTCCTATGGGGTCACCCTCCTCAACTTCTTCCAGCCTTTCCTTAATTCAACCACAGAAGTACTTAACTTCAGTTCATTGGTTGAGTGTAAGTATCTGTGTCTGTCTCAGTCAGCTGCTTGTTGGCCTCTCAGAGGACAGCCATGTCTTAAAGTACTTCTAGGCCATTTGAGATTCCTCTGTTGAGAATTCTGTGTTTAGCTCTGTACTCCATTTTTTTAATTAGGTTATTTGGATTGTCTGTGTCTTCTTGAGTTCTTTATATATATTTTTATATTAGTCCTCTTTCAAATATTTCCCATTCTGTAGGTTGCCATTTTGTCCTGATGACAGTGTCCTTTGCCTTACAGAAGCTTTTCAGTTTCCTGAAGTCCCATTTATCAACTGTTGATCTTAGAGCCTGAGCCACTGGTGTTCTGTTTGGAGGATTGTCTCCTAGACTGATGAGTTCGAGGCTATTCCCCATGTTCTGTTCTAGTAGATTAAGTGTGTCTGGTTTTATGTTGAGTTCTCTGATCCATTTGGACTTGAATTTTGTGCATGGTATGGTGATAAATATGGATCTATTTGCATTCTTCTATATGCAGACATCCAGTTAGACCAGAATCATTTGTTGAAAATGCTCTCCCTTTTCCACTGTATCGTTTTGGCTTCTTTGTCAAAGATCAAGTGTCCATAGGTGTATGGATTTACTTCTGGGACTTTGACTCAATTCCACTGATCCACCTGTCTGTTTCTATACCAATACCATGCAGCTGTATGGAGGGAGGAGCAGGAAGAATAACTCGCTAATGATTAGTTGTATTGGTTACTACTGAAAGCTGGTACTTTGTATATTCTATAAGAAGCATATCCTAGTATAGTCAACACAGCTTGTTTTGTTGTGGTTTTGGTTGGTTAGTTGGTGGTGGTAGTTTTTCTTTGTTTTTTAATGCATTGCCTACTGGAACCCCTGGGAGCATTAAAGCTATGTGTTTGCCTCATGGTACTTGTTGGTGAGGAGTGTCTGACTTCGAAACTAGCCTTCCTTCCAGTGAAGTCTTGACTTTGGAGTGATGTGTTCTGGCCTCTCTCTCAG
Seq C2 exon
ATTGACATGGATGACATGCTCTTGGAAGAACTGGCGCCAGTTGGAACAGTACCCATGCCACCCAACTTGCACCTGGAGGAGCCTTCACTCCAGGTGATGGAACCTGTTCAGGAGCCTCCGGTGCCGGATGCCTGGATTCCACAAGCTGGCCCCCAGGATCTGAACTACAGTGCTGATGCTGAATGCCAGTCCTTTCTGGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073176:ENSMUST00000101560:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.652
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=79.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types