RnoINT0168232 @ rn6
Intron Retention
Gene
ENSRNOG00000050562 | Zfp449
Description
zinc finger protein 449 [Source:RGD Symbol;Acc:1584453]
Coordinates
chrX:73392523-73397647:+
Coord C1 exon
chrX:73392523-73393075
Coord A exon
chrX:73393076-73397442
Coord C2 exon
chrX:73397443-73397647
Length
4367 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTTTTGGCTTCTCTCTCAGATT
3' ss Score
9.6
Exon sequences
Seq C1 exon
CTTTAAGTTCCTGTGGGAGAAAGCTGAGCACTGTTGAGTGAAGGGCGGTGAGTATGCTATGTTGTAACCATTGCTCTCTCTCCTTTTCATGTTTTCCTGTCTTCAGCTGTAAGTGGCCCCCCCCAGATTCTTACAGAGAGGAAAGAGCTGGAATCTGAACCATAGACCCCAGATAAACTGTAAGCTTCTAGAAGAGGTGATGGCTGTGGCCCTGGGCCGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACACAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCCGCTGGGCCTCATGAAGCCTTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTGGAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACTGCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACCACAG
Seq A exon
GTGAGAAAAAATGTGGGGGTCTCCTTAGGGGAGCAAAAAGAGGTAGGCTGCTGGGTCTGTGTCCAACATTTGGATTCTGATTCCACAGCCCCAAGACTTCTCCAGAGACTTTGCCAATGTTTTCTTTTGCTGGAATCAGCATATGGGTCTGAGGTTCTCCAGTGTATCTGTATCTAGAAAATTCTATCACAGTTAGCAATGCTTGGCTCTATGGCTTGCTAACCAGTTCCTGTACAGTATGATTGACAGTGACCTCTGAGTTGTCTACTTTGTTGATAAATTGCTTTTCAAAACAGAAGGGGGAGGAGAGGAAGAGTGTGTCCCATAAATTCTAAACTATTTATTATTCGGTTCTTTCCAGAATGATATGGCTGGCATTGAGTCAAGTAGAGTCTAGAAAGAATGCAAAGGAAGGCAAAGAAAATATGTCAACTGATACATATTTTCTACAGTATGTCTGTTCTTCACTTCAGGGGAAGACATCATGAAGTGGTCACAGGCCAATCCCTCTGCTTTCAATTACTGTGATGGGAGAGGCAGGAATTCTGACCAAAGTTCCAGGGCTTTGAGCAGTGTTGTCCCCGATGATGTGATTTTACAAAGTGGCCAAAAAAAAGTCTTAGTAAAGGGGAATAAATTCTGCTGTTTTCTCTGATTTGTGCAAAAGAACTAAAAATATGCAAAAGTTATTCCATTTATACCTGATAAACAGGGTGTGATTCTTGCGGGATTCCTTTCACGTACATGAAGGTTTGAAGGAGTTCCATGTTTCAGAGAGTGTAGCAAGAGCTCTTTATTATAAGTGATGTGCCCATCTGACCCATTAAATTCCAGAAGCACTGCCTGCCAGCATATTGCTTTCTGTTCAGAACTACCTTTTGGAAGCTTCTGTTCAGGTAGGGCATAGATGAGCTCAGGGCAAGTTGAACACAGAGGAGTCTTCCCATCAGGAAGTAGCAAGAGCTTCTACCTGACATTCAAAGTCCTTGGACTTGGGATGGGGTTTGCTAGAGCCCTTGGCTTCTGCACAACAAGTGGTTTGCCTAGGAAGTCACCAAAACTCTTTGCCTCTCTAGGGCTGGGTTATGGGTAGTTTCCTTTATCTTCCTTATTTGGGTGAAAATATTCCATTTTTTGTCTTTGGGAGATCTAGGCATTCCTGATTATCTCAGGCACTTGATACTTACAATGTAGCCAGTGCTGCTAGAATTAGCTGTGAATGTGAAATGGTACTCCTCACAGAGACTTGTACAGAGGAAGGAGCAGGTGGAATAGCTCCCTAGTAATTATTTGTGTTGGTTACTATTGAAAGCCTGGTACATTGTATATTCTGTAATAAGTACAGTCCAGGACAGTCAGCACTCCTGTCCTGTTATTGGTTGGTTGGTTAGTTGTTCGCTGTTTTTTTTTTCATTAAATTTATTTATTCATTTTCCAATTCCATATCAGCACTTCCTCTCCTTGCTGTAACCCCTTAGTAAGTCTTCCCAATTCTCCTTAGAAGAAGCTTCCCTCTGGGTGTCAACCTCCCACTCCCATCCTGCTACACCTCCCACTTCCGAACCCTGTTCATCAGGTTATGCAGGACTAGGTGCATCCATTCCCACCGAGGCCAGATAAGGCAGTCCATTTAGGGGTGCAGGATTCACACCGGCAAGAAGGTCGGCAACAGGGTCAGAGGCAGCCCCTGCTCCAGTTGATGGGGGACCCGTATGAAGATCACGCTGTTCATCTGTTACATATGTGCAGGGGCCTAGGTACAGTCAGTGCTCGCTCTTAAGTTGGTGATTCAGTCTCTTGGAGCCCCCAAGGGTTCATATTAGTTGGCTCTGTTGGTCTCTCTGTTGAGTCCTTGTTATCTTCCAGTTCCTCAGTCTTTCTTTCAACTCTTTCATTAGACTCTCTGAGGTTCATCTATTGTTTGGCTATGGGTCTCTGCATCTCTTTCCATTGAGTACTAAGTGGAGCCTCTTAGGAGACAGTTATGCTGGGTTCCTGTCTATAAGTCTAACAGAGTATAATTAATCCTGTCTACATGTATAACAGAATATCATTAATAGTGTCAGGGTGCTTGCCCATAGGATGGGTCTCAATATGGGGCAGTCATTAGTTACCTATTCCCTTAGACTCTATCTTTGTCTTTGCATATCTCTCATAGGCAGAAGAGTTTGGGTCAAAGGTTTGGTGGGCAGGTTGCTGTCCTTATCTCTCCACAGGGAGTCCTGCCTGGCAACCGGAAGTGACCACTTCAGGATCTGTACTCCCCACTGCTAGGAATCTCAGCTAGAATCTTCCGCTTAGACCCTCTGGGGCCTCTCCCCATCCCCCAGCTAATCTCCCTTCTCTCTCCCCTGCTCTCCCTATGTATGACCTCCCCCTGCCCCGTTCCCCACCCCCATCTCCTCTTCTACCCAGTTCCCTCCTCCCATTGACCTCCCTTATCTATTCTGTTTCCCCTTCTGAGTGAGATTCACCCATCCTCTCTGGTGTTCTTGTTATTTGACTTCTTTGGGTCTGTGGATTATCCTGTACTTATGGCTAATAGCCACTTATCAATGAGTGCATACCATGTGTGTTCTTTTGTGACTGGGTTACCTCACTCAGGATGATATGTTCTAGTTCCATCCATTTGCCTGTGAAATTCATGAAGTCATTGTTTTTGATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATTCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCGATGAACATAGTGGAGCATGTGTCTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGATCCTCAGGCAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACAAGTCAGCATTCCCACCAGCAGTGGAGGAGTGCTCCCTTTGTTCCACAACCTTTCCAGCATCTGCTGTCCTTTGAGTTTTAATCGCTATCCCCTCCCCCTCTGGTTGCCCTTCCACAGTTCCTCATCCCATTCTTCCTCCCCTCTGTCTCCAAGAGGATGTCTCCACACAACCAGATCTCCCACTCCCTGGGGCTTCAAGTCTCTTAAGGTTTAGGCAAATCTCCCACTGAGACCAGACCAGACAGTCCTCTGTTGTATGTGTGTCAGAGGCCTTGGACCAGCTAGTGTATGCTGTCTGGTTGGTGGCTCAGTGTCTGAGAGATCTCAGGGGATCCAGGTTAGTTGAGTCTGCTGGTCTTGCTGTGGGGTCACCCTCCTCCTCAGCTTCTTCCAACCTTTCCCTAATTCAGCCACAGGGGTTCCTGACTTCAGTCCATTGGTTGAGTCTCAGTATCTGTGTCTGTCTCAGTTAGCTGCTTGTTGGGCCTTTCAGAAGACAGCCATGTCTTTAAGTGCTTCTAGGCCATTTGAGATTCCTCTGTTGAGAATTCTCTGTTTAGCTCTGTACTCCATTTTAATTGGGTTTTTTGGATTGTCTGCATCCTCTTGAGTTCTTTATATATTTTGAATTTTAGCCCTTTGTCAGATGTAAGGTTAATGAAGATGTTTCCCAATCTGTAGGCTGTCGTTTTGTCCTAAAGACAGTGTCCTTTGACTTACAGAAGCTTTTCAGTTTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGCCTGGGCTACTGGTGTTCTGTTCAGGAAGTTATCTCCTGTATACCGATGAGTTCAAGGCTAACACTACTTTCTGTTCTATTAGATTAAATGTGTGTGGTTTTATGTTGAGGTCTTTGACCCACTTGGACTTGAGTTTTGTGCAGGGTGATAAGTATGGACCAATTTGCATTCTTCTATACACAGACATCCAAGTTAGACCAGCATCCTTTGTTGAAAATGCTCTCTCCCTTTTCCATTGTATGGTTTTGGCTTCTTTGTAAAAAATCAAGTGTCCATAGGTGTATGGATTTACTTCTGGGTCTTCAATTCAATTCCATTGATCCACCTGTCTGTTTCTATACAATCTCATGCAGCTGTAGGGAGGATGGAGCAGGTGGAATAACTCGCTAGTAATTATTTGTGTTGGTTACTATTGAAAGTCTGGTACTTGGTATATTCTGTAATAAGCACATCCTAGTACAGTCAACACTCCTGTTTTGGTTGGTTAGTTGGTGGTGGTGGTTTTTATTTGTTTGTTTTTTAATGCATTGCCTACTGGAATCCCTGAGGTCTTTAAAGCTACATGTGTGTCTCACGATACTAGTTGGTAAGGAATATCTGACTTAGAAAGTGGTAAAACTAGCCTTACTTCCAGTGAAGTCTTGACTTTGGAGTGATGTGTTTTGGCTTCTCTCTCAG
Seq C2 exon
ATTGACATGGATGACATGCTCTTGGAAGAACTGGCACCAGTTGGAACAGTACCCATGCCACCCAACTTGCATCTGGAGGAACCTTCACTCCAGGTGATGGCGCCTGTTCAGGAGCCCCCAGTGCCAGATGCCTGGATTCCACAAGCTGGGCCACAGGATCTGAACTACAGCACTGATGGTGAATGTCAGTCCTTTCTGGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050562:ENSRNOT00000073827:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.681
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=79.7)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]