MmuINT0179334 @ mm10
Intron Retention
Gene
ENSMUSG00000090659 | Zfp493
Description
zinc finger protein 493 [Source:MGI Symbol;Acc:MGI:1920208]
Coordinates
chr13:67783790-67784489:+
Coord C1 exon
chr13:67783790-67783916
Coord A exon
chr13:67783917-67784393
Coord C2 exon
chr13:67784394-67784489
Length
477 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTATTCCCCTTTCCAAACAGGTC
3' ss Score
12.02
Exon sequences
Seq C1 exon
AAACTGCTGTCATTCAGAGATGTGGCCATTGATTTCTCTGCAGAGGAGCGTGAATGTCTGGACTCTGCTCAGTGGAATTTGTATAAGGAAGTGATGTTGGAGAATTACAGCCACCTTGTGTTCCTGG
Seq A exon
GTAAGGATCACTTCCATTGTGAACTCTTATTTCACTGTCAAAAGGAACTGCCTCCATTTGTAGGGTAACTCATGTTGGAGAGTTTGTGCCTTCCAACAATGTAGCTCATGTGCCTGCCTTTAAAGAGAAAAAGATGGAATGTGATGGGGCTAAGAAATATTTTAGAGTATGCTTAGCCTGTTTGTGGAGGTATGCACCCTCCATTGTAGTGGCCTTGTTAGTAGCTCGGTAGCAGGAGGCTGGAACACATGTTAGAGAAAATGCCTCATCCTTCTGCGTTAATACTTTTCCTTGTAATGAGGCTCAAGGAATCGCAGGTTGTAAATGACTCCTAAGAATATCATCTTTCAGGAAGTGTGTTAATCATAGAATTTTCTGCAGTTGTTCATAATCTCTTCCCATATATGCATAGAACTAAGTCCAAATGTTAATTTCCAGGAGAAAAGAGCCAAGCATCTTATTCCCCTTTCCAAACAG
Seq C2 exon
GTCTTGCTTTCTCCAAGCCACACCTGATCACATTTCTGGAACGACGACCAGAGCCTTGGAATGTGAAGACACAGGCAAGTGTAGGCACATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090659:ENSMUST00000164936:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=PU(25.0=15.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCATTCAGAGATGTGGC
R:
GGTATGTGCCTACACTTGCCT
Band lengths:
216-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types