RnoINT0081853 @ rn6
Intron Retention
Gene
ENSRNOG00000016462 | LOC102547287
Description
zinc finger protein 728-like [Source:RGD Symbol;Acc:7718701]
Coordinates
chr1:37931407-37932084:-
Coord C1 exon
chr1:37931955-37932084
Coord A exon
chr1:37931503-37931954
Coord C2 exon
chr1:37931407-37931502
Length
452 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTCCCTTTTCCCACAAACAGGTC
3' ss Score
10.86
Exon sequences
Seq C1 exon
CAGGAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGTCTGGACCTTGCTCAGTGGAATCTGTACAGGGATGTCATGTTGGAGAATTACAGCAACCTTGTGTTCCTGG
Seq A exon
GTGAGACTCACTTCCATACATGTTTTACCACCAACATGTAGAACATCCCATGGGGGTTTGTGCCATGTAGCAGTAACTTTTGTATACCTGCTTTTGCTGATATTCTAAGAAATATTTTACTGTATTCTCTTGTTTTTAATATGGCTTTTTGGGTTGATTTTTGAAATACACATCCTTCATTCTGGTTGTAACTCCATAAACCCAGTAGCACGAGGCCTGGGGCACACATTAATAAATATAATGTTTCATCCTTCAGCTTTCATGTTTCTGTTTAAATGCAGCTAAGGATCTTCACATTATAGATTCCACCTACATATTCTATATGTGCTTCTTAGGAAACATTTAATGAACTAATTTTCTACAGTTCTCACCTTTTCTTAGAAGATTAATAATGGAGTAAGATGTCAATTCCCAGGAGAACAGACATTGTTGTTCCCTTTTCCCACAAACAG
Seq C2 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCACCAGCAGCTACCATGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016462:ENSRNOT00000022527:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAATGCTGTCATTCAGGGA
R:
GTGCATGGTAGCTGCTGGTG
Band lengths:
222-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]