MmuINT0180007 @ mm10
Intron Retention
Gene
ENSMUSG00000097333 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67520626-67521319:-
Coord C1 exon
chr13:67521193-67521319
Coord A exon
chr13:67520722-67521192
Coord C2 exon
chr13:67520626-67520721
Length
471 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTCCTTTTCCCACAAACAGGTC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
Seq A exon
GTGAGGTTCACGTCCATAAATGAATTCGTATTTCACCACCAACATGTAATTGTCCCCACTTGTGGAACATTCCATTGGGGCTTTGTGCCATGCAGCAGTGACTTATGTACCTGCTTTTGCTGATATTCTAATAAATATTGTATTTCTTCTTTTAATATGGCTATTTGGTTTGTTTTTTGGAATATGCATCCATTATCCTGGTTGTAATTCTATAAACCCAGTAGCCTGAGGTATGGGGCACACATGTTAAAGTAATGTTTCACCCTTCAGCTTTTGTGTTTACTGTGTAATGGAGCTAAGGATCTTCAGATTAGAGATTCCACCTACATATTCCACATGTGCTTCTCAGGAAACATTTAATGAAGTAATTTTCTACAGTTCTTCACCTTCTCTCAGAAGATCAATAGCGGAGTAGGATGTTAATTCCCAGGAGAACACACAGACATTGTTGTTTCCTTTTCCCACAAACAG
Seq C2 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097333:ENSMUST00000181767:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTCATTCAGGGATGTGG
R:
GCAGCTGCTGGTCTCTTCAC
Band lengths:
206-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types