MmuINT0180007 @ mm9
Intron Retention
Gene
ENSMUSG00000071285 | Zfp87
Description
zinc finger protein 87 [Source:MGI Symbol;Acc:MGI:107768]
Coordinates
chr13:67621562-67622255:-
Coord C1 exon
chr13:67622129-67622255
Coord A exon
chr13:67621658-67622128
Coord C2 exon
chr13:67621562-67621657
Length
471 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TTTCCTTTTCCCACAAACAGGTC
3' ss Score
11.31
Exon sequences
Seq C1 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGACGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
Seq A exon
GTGAGGTTCACGTCCATAAATGAATTCGTATTTCACCACCAACATGTAATTGTCCCCACTTGTGGAACATTCCATTGGGGCTTTGTGCCATGCAGCAGTGACTTATGTACCTGCTTTTGCTGATATTCTAATAAATATTGTATTTCTTCTTTTAATATGGCTATTTGGTTTGTTTTTTGGAATATGCATCCATTATCCTGGTTGTAATTCTATAAACCCAGTAGCCTGAGGTATGGGGCACACATGTTAAAGTAATGTTTCACCCTTCAGCTTTTGTGTTTACTGTGTAATGGAGCTAAGGATCTTCAGATTAGAGATTCCACCTACATATTCCACATGTGCTTCTCAGGAAACATTTAATGAAGTAATTTTCTACAGTTCTTCACCTTCTCTCAGAAGATCAATAGCGGAGTAGGATGTTAATTCCCAGGAGAACACACAGACATTGTTGTTTCCTTTTCCCACAAACAG
Seq C2 exon
GTCTTGCATCCTGTAAGCCATACCTGGTCACATTTCTGGAGCAAAGACAAGAGCCTTCAGTTGTGAAGAGACCAGCAGCTGCCACCGTGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071285-Zfp87:NM_133228:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=91.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGTCATTCAGGGATGTGG
R:
GCAGCTGCTGGTCTCTTCAC
Band lengths:
206-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: