MmuINT0179342 @ mm9
Intron Retention
Gene
ENSMUSG00000044452 | Zfp507
Description
zinc finger protein 507 [Source:MGI Symbol;Acc:MGI:1916378]
Coordinates
chr7:36578542-36586547:-
Coord C1 exon
chr7:36586457-36586547
Coord A exon
chr7:36580638-36586456
Coord C2 exon
chr7:36578542-36580637
Length
5819 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CTGCTGTGCACTGTCTCTAGATA
3' ss Score
8.09
Exon sequences
Seq C1 exon
CTGGATTGTGAATATCGATCCAGGAGACTATCTGTTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq A exon
GTAAGTCACTTACATCTCACTGAGATGCCTTATTTATAAACCGCCACCACTGTGACTGGACCCACAGAACTCTGAGCAAACGAAGCTGTTTGCTGCTGCCTAGCATCCATCCGGTGCTGTTACTTGATCATGCTCACCTTGAGCATGGAAAGGGAAATCGGTATACTAGGGAAAGCGTGGTTTGAGTTCTGAAGCCAGGCACTGTTTCACGTCTGTGAGCCTCAGAGGTGTTCCTTGACACTTTGTGTCCAAAGAAGGGCTTGGCCACCAGGAATTACAGGAATATTACAGGAAATGGACGCAGGCCTAATTCTGGGTTTGCAGCTCCAGGACAGGTGGTCTTCAGCGCTATGTTTGGCATGTGTGTTTCATAAATTACAATGAAGCTGAACACTACTTGATGTTAGCTACGACTGTGTTTTAATTGTAGCTGCAAAGTCAAAATATTGTCCCAGGCTAGGTGCAGGTAAGACACTCTATACTATGAAACCAGTATACTTCTGTATTTATACTCCAGTTTTTCTCTCAGTTGCTATTATTACATTGAGCTGAGAAGATTTTAAATAAATTGTAACTGACCTTTGTAAGATGTGAAGTAAAACTAGCTTTTAGGTTACTTTTAATAGGCAGTTTGTGATTCCATCTCTAAAAGTTCATCCAGCTTTCCCCTCACATTTCACACCAGAAGAAGCTAAAACAAAGAGTGACTCGCCTGGATCATGCAGCCAGGGCACTTCAGAGAACAGAGGAACCCTACCTTCTTTTGGCTAAAACAGATGTCTGAAAGAGTGTGAAATTCATTGGCCATCGCTTCTGTTGTTTTGGTGTGGGGTTTTGTTTGTTTATTTACTTAGTTGGAAAAACGAAATGCATACTCTAAAAGAAGATTTCTTTATATCGTCTTTCTCTCTTTGTATATACCCAGAAAATTAGAGCCTTTCTTCAAGCCCACATGAATCATTTCGCTCAGTTCTACATGTAGCCATACTGCTATAACTAAAAGGAACTAATTACATACACAAATACACCAAATAGCAAATTACAAGAAAATAAAGACAACTGAATTTGTTCACTTTTCTTGGGAAAGACATTAATTACAAGCTTTTCCCTGTGGATGACTGTTGTCAGGGACTCGGTATGAAAGACTGTAGAACACTGCTGGTTTAGGAGAGTACCTAATTCACTTGTTCTGACTGGGTCTTCTGATCTAGTGGTTACAAAAAAGCTATCTCCCTCGTGGCTAACATTTCTAGGCTTGTGTCTTGGTGAACCTTGCAGTGCAGTGATTTTTATCTGTTCACTACCTTAGAGAGCATGCTAATTCCTATTGTAAGATGTTCGTGTTAGAGTTTTAGAGTAGGCTTTCTCATTTCTCAACCTTTCTTGTCACTCTTAGCCTTGCATTTACAGCAGAGAAGCAAATAGCTCTCAAATCAGGATAACTGAAGGAGGTTATATTTACAAAGATAATATTACCAGGTATTGGCCTTCTATTCGCAGGCCACAGAGTGATGGTGTTAGTGGGAGAAGCAGCATCAGGAGAACAGAAGTGCCAAAGCCAGAAATAGATTTGTAGAGAGCAGCCATCCAGGAAGAACTGACCTGTTAAGAAGCAACCAATCCGGGGCTGGTGAGTTGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCATCCACATGGGGCGGGGGAAAAAAAAACTAAAGAACAAAAAGCAACCAATCCAGGGTGACCTAGAAGCAGAAACCAGGACATTGACTGCCCTGTTCCTTCTCACCTGTGTTCCTCTCCATTTGCAGTGCCCTGCCAGAGGACTAGGAAGCAGAGTCCCATAGAGAGAAGGCCACAAGGGGCCCAGAGAGCACAGGTGGTGATGTCTCCACACCCCTAGATGCTGGGGACTAAGATGGAACTTTCTGGTTTCTTTAACAGTTCGGTTACATCGAGTGATGTTTTTCTGGACGCTGTCTTGTGAGAGGGCATGTGACGTTTTACTGAACATAAACACTTGAGCGGACTCATGATATTTAGGAAGAATATAAATAGAGCCCCACAAACACTGAGAAAACGCGCTTGCATTGCAGTACCACGTACTTCTTTGCTGGTGTTCACTTTGTAGAGAGAAACACACCAAAGAACTTCTCATGGTATTCCGGCTGATTCTGGCCGCTTCTGCTAACTGGTGCCAATTTGGCTGAGCCTTGCTGTTTCTGCTGGATTGTGCCACTACTGCTGATTCATGGTTGGTGTTTGCTATTTAACTGGACTGTTGGTATCCGACAATAAAGATTGGAATTACCCCAAGGGACTACTTCTAAACAGGTCCACAACTCTCTTTTCCTAGTAACCTTCTTTTTCCCCTACTTCTGGTTGATGGGTTAGAAGGAAGATTGCAGAGTTTAAGAACCCTAAATAAAGTAAGTTTTGAACAATCTAACCCTACAGGGACCAGTGGATATACTGCCTTTTCCAGAAGCCTTGTGCTTGCTCTCTGCGCAGAGGAGCCTTCTCTTACTTAGGATTTGGCCATATATACTTAGCCTTCATGTTACCACAGCGTTGGAAAGCCAACATTAGTCTTCTCTAGCTTCTCCATGTGCTTATCTATGTTCACCTTCGAGTAACTATGTCAGTGTAAAAGCCTGGCCTACCTACTTGCTGTGTGCCTTGCACATGGTGATGTTGAGGGTGGGTGTATTTGGTTTGTTTTTATTATGAAAAACTTTAGTCATTTGTACAAGTAGAAAGAAGAGTATAATGAAGAGGTAATCATGCCACCTTCACTGACAGAATTACTTCTCCCTCTATCACCTTCTTCCACAGTCCTACCCTACTTTTGTCCCCCAGCATCATTTCTTTCAGCTGTGTTTGCTTCGGTCTCTTAAGTCCAAGGATGGAATTCAGATTATCGTGATCCGTGGTGTGATTTGAGTCACTAGTACTGTATGCTGACTCTTTTTCATCTCTAGTTCAAATGAATTTTATTAGCTCACTTGACATATTAAATTATATATAAATATCTACATATTTATATGTACAATGTATATAGTACACATAGGCTGCATGAATGCCATAAGGAAAAAAATAGGAAATTAAAGACGTAGTTGGTTTTAGTGACCTCCTCTCTTGTGTACAGTGGCTGTTTGTGACCTTTTATTTAACAGACTTTCCTTTTAATGAGTTTTTGCTTGCTTGTTGGTTTTGCCTGCAGACCTAAACTGGTTTTTTCAGGTGCTTCTTGATGCGTTTTATGTTGTCATATCGGTTTGATAGCTGCCTTACTGTACTTATCCCCAAATGTATGCAGCCTCTAAAATGAGATACTTACATAAATGTTCTAGGGAAATTGGAGCATCTGCTGCAAGTTGCCATTAGCTCTTAATGCCTGAGCACACGCAGCTCTGAAAGTGAGTGTGTGTCAGAGTCTTTTGTATTAGCCGTTTTCTTGGGCTAAGATGAACTCCTCCTCTTGACTTCACTTTCTTTTTAAGAAGCACACTGAACTATCCATGGGGAGCAATTTGCACTGCTCTGTCTTCCTCCTGTTGGATCATTAAGTAGAAGAGAGGAATCAGGAGTCACCTTTGTAACACTAGGTGTGAAGTCTGTTGAACAAACATTAAATGTTCACCAAGTTATCAGCTAGCCTGTGTGGCTCTTACACCCACAGGAAGGGAGATCTTGTATTTACAATACTATACGTTGTATCTGGCCAAGAAACTGAAAATGCTGTGAATTTGTTACTTTTATTATGTAACTAATATATTGTTAACAGTTGAACTGAATGGCAACAGAATTCCTTCAGTTATGACCCCACAGGGGAATCAGCAGTCACATGAAGAACCACAGCTTCCCTTGGCCAAAACCCACTGGGTTCTTGTTTTGCTTCAAGTGTGTCTGTGCATCTACTTGCATGAGTCGTCTTTTCTGCTAAAGAGTCACTGTTTCTGCTAAAGTAGCTCACCAGCCAATCCCCAGGCTGATTCCACCTCACTCCACCTGACTCCCTGACTCCATCCCCAGTGCTGGGGTTATAGGTGTGTGCTACAATGCCCAGTACAGTTTTCACATGAGTTCTGGGAATCCAACCTCAGGCCCTCGTACATGCAACAAGCGCTTTATCCATGAAGCCATCTCCCTAGCCCCTAAAACTGGAGTCTTCAGACAGTGAGATGTGTTTTAAGATGCCACAAAAAGGTTTTTTTGGTCATTGTTTCCCCCTGAAGAACTACACTGTCCTTTATCAGTCTCTCCTGTAGCAACTCAAACTTTGGTGTCTCAATCTAAAAAGATTTGTTCCTTCTGAGACACAACAAAAAGACACAAATGTTCTTAGAGGGATTTTTAGAGCTGAGATGGCTATGTTATTATGGTTCTGGAATATTCCCCTTCATGAGGTGGTTGTTACAGGCTACCCCTAGGAGAAAAAAGCTGATTTTTAGCTAGGAATAAAACATGTGCATTTTATCTGACATGGACCTAGATAAAGACAACTCAAGATGGAGAAAGTGGCACATAGGACAAAAAGGCAACAGTGTGGCCAGAGACTTCGGAAAGGGGCAAGCCCAAGTGCAGGCGAGGAGTTCCCTAGGAGCCTGCCTGGTGCAGTGCCGTAGGTATGCTCCTGGCTGGGAACTAAAGCCCTCATGCAGGATTCAGCCCTGTAGAGAGAAGAGTGCAAAACTGGAGTTTAAGAATGATTCCTAGTTTTTGGTCTGTAACTTGTGGTGCTGAAAATCTTGTTGGCATTTATTGAATGTTGTGAGCTAGGTTCCAGAATGTACCTAAAATGTGGAAAAACAAAACTTGTTGCTGGAAAAGAGCCTAAACTTAAAACTTCGGTCCAAGTCAACAAAATAATCTCAATTTAAGTCAAAGGAAATGTCTGAAGAGAAAGGGCTGCCAGGAAGTGTAAAGGAGATTCTGAGGCCTCCAGAGGGAGGGTGATGTTGCTCCTAAGCGCTGTGTACCTTGCTGCATTATTCTGTGCGCCTGCAGGAAACACTTCCCGGCCTCTGTCTGGCACTGAGCCAGAACCAGAATGACAGCGTTTGCTTCCTAAGCCCATCCCCTGCTCAGGAGAGAGACACGGATGGGGATGGGGAACATCTGACCACTGATGCGACCTCTAGGAAGCCACAGCAGAGTTTGTGGTTTATCTGGCGGACCATAAACCAAAGGAAAGAAAGGAGGAAGTAGATCATTGCTCTTATTTAGTTTCATTTGCAAAGTACTTCCCAAAATTCAGTATTCCTTATAGTAGGATGTGAATATATTTTCAGAATTTCAAAAATTTGAGCAGAGAAGTGTGATTTTTCGTTATCTACAGTTAAAATTTGGCATAAGAAATAGTTTATCCAGAGTTACATGAAATCATGTTGGCTTCACAGACTGATGCTTTCCAGTAGCTCGAGGTGACTCCACAGGCCCCAAGGATGGCTGTTTCTTTAAACAAAGAATCATGTCTCTTTAGTTCTAGAATCTCAAGGGTTTCTTTAAACAAAGAGTCATGTCTCTTTAGTTCTAGAATTGCAAGGGATTCAAGGGACATTAGTTCTAGAATCTCAAGGAGGCTGGGTGACAGGATAAGGTGTTAAAGTCTTACCCAAGGAACAGGGTCTTTATCTGTCTCTAGGAGACCGTTTCAAAAAGGAATTCTGAGCTGTTTAAGTCTATTAGGGACAGTTGGGTGCATTGATAGGAACCTCCCAACTTAGAAGATATTTAAACATTTCAGTCAGACACCAGAGTTGACATTATCCCATAACCCATGCTCTCTGCTGTGCACTGTCTCTAG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACCGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGTTGACCAACAAAGAAAAGCTAAAGCAGATCCATTGGTCCACGTTATCCAGAAGCTAAGCAAGATAGTGGGGCATGAGAAGTCACAAAAATGTCTACTGATTGGGAAAAAGCGCCCACGTCCAAGTGAGACAGCAAACTCTCTTGAAAAGCTAGAGAACTGTGAGATTCCAGCTAAAGCCACTGAGTCCCCTGCTGCTGGGGTTAGGAAAACCGAGATGTCACAGGCAAGTTCCACTCTTGCTTCAAATGATGGGAAGGCTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCACCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCATGGGCAGCAGCATGACGTGATGCTCATGTGCTCGGAGTGCCACGCCACCTCCAGGAGCCAGCAGGAGCTCGAAGCGCACGTGGTGAGTGAGCACGAGAACAGTGCCAGTAGCCAGGCCCGGTCCAGCCCCTCCGGTCAGGGAGCCACAGAAAGAAAGAGTGAGACCATGGTAGACATCCCAGTGAACATGGGCAGTCCACAGACCCATGCTGTCCAGAGTGCAGCCATGGCAGAGTCGGGTCGGAGGAAGTGGTATGCATATGAACAGTATGGCATGTACCGGTGCTTATTCTGTAGCTACACCTGCGGCCAGCAGCGGATGTTAAAGACACATGCTTGGAAACATGCAGGGGAAGTTAACTGCTCCTACCCAATCTTTGAGAATGAAAATGAGCCCCTTGGCCTTCTGGCTTCTTCTATGTCTGCTGCACCTGGTGGGGTTGATGCAGTTGTCATTGCTATTGGGGACAGCGAGCTGAGCATCCACAATGGGCCATCTGTACAAGTACAGATTTGCAGCTCTGACCCACCGTCTTCATCTCCTTTAGAACAAAGCACAGAGGAGGGAGTACACCTAAACCAGGCAGTCACGCTGGACGCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCCGAGGAGAATCTCTTTGCTGATAGTTTGCTATCTTCAGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGAATGTCATTGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCACCAAAACATTTCCTCATTAATGCCGAAATGGAAGAGGGGAAGAGCCCGAGCCCCTCCGAAGCCCAGACTGGGTGTGTAGGAGCAGGAAATATGTACCATGCTGATAAATGTACTGTTGATATTGGGGGGTTGATCATCGGCTGGAGCAGTGCAGAGAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGAAGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCGATAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCCAGACACTGGACAAAGGCAGGTCAGTGGTCCATTGGCAACATACTCAAAAAAAATCATGTCTCCTCTTAAGAATTCTACAGATGGAGTAACAAGTTTTAACCAAAGCAATTCCACTGTGGTAGCTCTCCCAGAGGGAAGGCAGGAATTGTCAGATGGGCAAGTTAAGACAGGCATCAGTATGTCCCTTCTTACCGTAATAGAAAAACTGAGAGAAAGGACAGACCAGAATGCATCAGATGATGACATTTTGAAAGAGTTGCAGGACAATGCCCAGTGTCAGCCCAACAGCGATGGGAGTTTGTTGGGGTCCAACGTGGTGGAGTACATCCCAGATGCCGAGCGGCCCTACCGATGCCGCCTGTGCAACTACTCAAGTGGCAACAGGGGCTACATCAAGCAGCACCTGCGTGTCCATCGGCAGAGGCAGCCTTACCAGTGTCCTATCTGTGAGCACATAGCTGAGAACAGCAAAGACTTGGAAAGCCACATGATCAACCACTGTAAAACCAGAATACACCAATGTAAGCAGTGCAAAGAATCTTTCCATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044452-Zfp507:NM_177739:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.456
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: