GgaINT1030592 @ galGal4
Intron Retention
Gene
ENSGALG00000004532 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9235578-9240164:+
Coord C1 exon
chr11:9235578-9235716
Coord A exon
chr11:9235717-9238050
Coord C2 exon
chr11:9238051-9240164
Length
2334 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTTAATGTTTTTCTCCTAGATA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGAAACAAGTAGGGCCAATATTTGCTTGTTCAGAATTATTGCTTCGAGGAGATGTTCCAAACACGAATGCTGCAGTGTGAGTCTGAGTTTCCCAGCACTTACTGAACTTTTCAATTATAAGGAACTCCAGCCCAAACA
Seq A exon
GTAAGTTGAATGGCAAATAAAAACACCTTTTGAGTTAGTTCTGCACAGAATTTTTCTGTAGACAGACATCATGGATGCTTCCGCAAAAAACTGTGGCGCCCTTAAGGCTGACAAATGTATAAGGCATGCTTTGGAAATGTAAGCAGCACTCTGCTTATTTACAGTTTGTTGGTGCAATTTTAGTAATTTTATTTATCTTACTGCATTTCAGTACAAAGCATCCAAAGGTCTTGATCCTGTACATATTATCTGAGCGTTAATTCAGCACCCAATAGCTCTCCCAAAGCCCCATGGAGAATGAATTTCAGTTATTCTGAATGAGTACCTTGGAAGATTTATCTCCGCATTAGATAAATTCATAAATGCAGATTCTATTAACGTACAGAGATATGGTAGCAGCCTGCTTTTTATTAGTGGAAGTACTTAAGTCCCATTGTGGAATAATTACAGGTGGTTACATGTAGTTCATTTCTTGATGGATTCAAAAAATCTGTGTGTTCAGACACAAGTACCGAGGGAAGCAGTATATTATGCTCATATCCAAAAAATGAGGAACAAAAGTATCACATAACTGTAGTCCATATCTTCTCTAATAGTGCTTTTAAATAAAAATCTGATAATAGTGAGAAAGGCATGTCTCAAGGTAACTCCACTAGCTGTAATAATTAAATATAAGAAAATCTTTTTGTTGTCGTTATATTAGGTTAAAATAGAAATTGTATGTTCTTGTGTTGAGTAGTCAGATTAGATTTAACATCAAAGCACTTGCGCTGCTTTCCTGTACAATAAAGGATTTTCTTGCAGTTTTTATTTAAGTTCCTTTGAATGTGAATTCTTTGTCTTCGTGCTGTACAGTAACAGGAAGGTGCTTCATTCGTACCCACAGTGTTGCCTCGGCAAATAAGTCTGCAGATCTTCTGTTTGCACTGGGCAATCTCATGAAGCCTTCCACCATTATAGTGAATGTTTCCCCAACATTGTTGCATCTCCTGTAATATGAAAATACAAATGCATTATTTACATTAGTAAAAACAGCTTTCTGACACACGCAGTGCTGCCTTTGGTAACAGATCCCTGCTGCAGCTCCCTCTGACACGTCACTGGGGCATATGGGCAAAGGAAGGCTTTTATTCCTGTTTATGTGCCGGAGGAAACAATGTTCCCCAGAAATCATTATCAGTATTAAATTCCAGCTAAATACTAGGTCAAGAAGTGGAAAAGAGAGGATTTAATGCATCTTTAGGCCAGTTGTAGAAGTTGTGATTTGGCCTGTGCGTCTTTCTCGTAAAAATAGAAAAAAAGTCATCATGACAGAACGGGGGATAAAGTTTCAAGGATAGCTGGTAAAAGAAACAACTGGCATTCTTTATGCTCTTACGTTTTATACACAGTATGTGAAGTATAAATTGTGTATTAAATAACTATTTATATACATAGCAGAACTTGTATAGATTATTTGCAGACATTTTTTCAGAAGTAAATTCCACTGGAAGACTTTCTGTCCAGCAGAGCCATCCCTACCCCACAGTTCTGACCACATCACAAAGTATCTTTTCATGTAAATTTTTACATATTGGCTTCTCAGTTAACCTCCACCACTACCACATTACTGCCTGTGGTTTATAGTTAGATATGTTTAAAGGAAGTGTAAGTGGAAATAGCTGCTGCCTTTAGCTTTCCCTCAAAACAGAAAAATAAAATCCTAACTTTTGTACAAATCAATTTTCCCTACAATTAAGGAATTGTAGGAAAAGCTACGAGCTTTTCTGGAAAATAACATTTATAATAAGTCTAATTTGACAGTGAATGGCCTTTAATACAGTCAAGGTGAAATGACTAATATAATATTGGAATTAACCATAATATAAATTCCAGAATTACTCATTTACCTATTCAGGAGACATTAGTGTATCAGAGTGAGAATGTTAGGGATACATTTCCATATCATATCATACAGCTTTTAAGTAAAAATCTGCCAGTTCTTGTTGATTAGTATATTTAAGTGTCCAGCATTCAGACATAATCCTTGTAAAGAAAAAATACAATAACTAACAATGCTAATGAGTTTATGCTAGAAAAATATTTATCTTGCTGTTATACAACTTGACGACACACAGAGGCTGTTTTGGAAATACTCTGTGCAACTGTTTTGAATAGCATCTATATCATTTACTTCATGTCCTCAAAATATTTGGCTATTTTTATCACCATTCTGGAAGTTTTTATAAAGCTGGTGGTTTTTGTCTTCTACATTTAGTAAAGAAATTTAAATAGTAGTGGATTGTATTTTTATTGTTGTGTATAATTTTTAATATTTTAATGTTTTTCTCCTAG
Seq C2 exon
ATATTATGGAAGAAGGAAGTAGTGTTGCAGTATTGATGCCAAGTATTGGAGAACAGGAGGCTGTACTGATCTCTGAAACAGTCATTGGCCCAACACTACAAAACAGTGAAGATCAGAGAAAATGTAAAACTGATCCATTAATCCACGTTATCCAGAAGCTAAGCAAAATAGTTGAAAGTGAGAAATCACAAAGATGCCTTTTAATAGGGAAAAAACGTTCCCATCCTGACGCTTCTGCACAGTCCTTTGATACAGATAATCTTTGTGAAATCCCAGCTAAAGCAATTGAGCTATCTGTTATTGCTGCTAAAAAGACTGAAGAGTTACAAGCTGACTATTTTGTGACTGAATGTCTTCCACAAAGCAAAAAGAAGGTGACATGCTACCAGTGCAGTCTATGTAAATTTCTATCACCTTCTCTCTTAACGCTACAAGAACATATAAAACAACACGGGCAGAAAAACGAAGTGATACTGATGTGCTCAGAATGTCATTTTACTTCTAAAAACCAAGAAGAACTTGAATCTCACTTCAAAAATCACCATGAGAATGGAGGTAAAAATAGCATCCAGACAAACGTGCAGCAGTGTGTAAATGCATCAAGCTCATTTTTGCAAGGGACGGTGGAAGGAAATGTCAAATCAGGGGCTGGAAATACAGAATGTAAAGATACCACTCAGTCTAGTCACATATCTGAAATGGGTAGGAGGAAATGGTATACCTACGAGCAGTACGGCATGTACCGATGTTTAATTTGTCGGTACACCTGTGGTCAGCAACGAATGTTGAAAACGCACGCTTGGAAACATGCAGGTGAAGTTAACTGTTCTTATCCTATCTTTGAGGAAGAAAATGAAATTGCCAACTTGTCGGAGACAGCAGTAACTCGTACACCTCATAGCATGGACACAGTTGTTCTTTCTTTGGAAAACAATGAACTAGATATCCATAGTGAACCTACTCTTCAGCTTCAGATTTGCAATTCTGAGCAACTGTCATGCAAATCACCAGTAGGAACAAATGTAAAAGAGGATGAGATGATAAATCAGTCTGTAGTGCATTCTCCTACTACAGAGGACACTGTTTCAGATACAGAACAGGATAATTTGATAACTGATAGCCTACTTTCATCAGCACAGAAAATCATTAATTGTAGCCCAAATAAAGAGGGTCACGTTAACGTAATAGTCGAGCGTTTGCCAGGTGCTGAGGAAAGTGTCCTACAAAAGCCTTTCTTGATGAACACTGACATAGAAACAGAAAAAAAATTTATCTCGGAGGAATCCAATGCTACCTCTGAAGAACCCAATGGAGTGTATCATTCAGGTGAAATCCAAGAAGTAATAATAGGATGGAATAATACTGAGAAAAAAGATAACGAATTAAGCTCTATAAAAAATGTAACAACTGATGAAAATGCACCTCCTGTACGAAGAAGGACAAATTCAGAGTCTTTACGACTACACTCACTAGCTGCAGAAGCTCTTGTTACAATGCCTATCAGAGCTGCAGAGCTAACAAAGTCTAGCTTGAGGACTTTGACTGGGGAAGACTCTGTGGATGCAGATACAGGGCAGGGAGAGGCTGATGGGCCAGGCATGGCTCGTTCTAGAGTGGCATCCTCGCTTAAGAATCCGTCAGAGGAGTTTACTGGCTTAAACCAAAGTGAATGTGCAATAGTTGAGATACAGAAAGAAAGGCCAGAGTTATCAGAAGCACCAATTAAAATGGGCATCAGTATGTCTCTACTCACTGTCATTGAAAAACTGAAGGAAAGGACAGATCAAAATGCTTCTGATGATGACATTTTGAAAGAATTACAAGACAACGCACAATGCCAAAATGCAAATGATGCAAATATTCCAGGAAGTAACCTAGTAGAATATATACCCAATGTAGACCGACCCTACCGCTGTCGCCTCTGCCACTACAGCAGCGGTAATAAGGGCTACATAAAACAGCATTTGAGAGTCCATCGTCAGAGGCAGCCCTATCAGTGTCCTATCTGTGAACACATTGCTGACAATAGTAAGGATTTAGAGAGCCACATGATCAACCACTGCAAAACAAGAATGTATCAGTGCAAGCAGTGTGAAGAATCTTTTCATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532:ENSGALT00000007217:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.320
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF0009621=zf-C2H2=PU(50.0=1.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]