RnoINT0168291 @ rn6
Intron Retention
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92110491-92118511:-
Coord C1 exon
chr1:92118421-92118511
Coord A exon
chr1:92112575-92118420
Coord C2 exon
chr1:92110491-92112574
Length
5846 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTGCTGTGCATTGTTCTAGATA
3' ss Score
8.43
Exon sequences
Seq C1 exon
CTGGATTGTGAATATTGATCCAGGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
Seq A exon
GTAAGTCACACCTCACTGAGATGCCTTATTTATAAACTGACACCTCTGTGACTGGACCCACAGAACTCTGCGCAAACGAAGCTGTTTGCTGCTGCCCGGCATATGGTGCTGTTGCTCTGCTCCATGCTTGCCCCATGTTCACCTTGAGGATGGAAAGGGAGATTGGTACATAGGGAAAGCATGGTTTCACCTCTGTGAAGCCTCAGATGTATTACTTGACACCTTGTGTCCAAAGAAGGGTTTGGACACCAGGAATACAGGAATATTACAGGAAATGGATTCAGGCCCAATTCTGAGTTTGCTACTCAGAGTGGTCTTCAGCGCTATGCTTGGCATGAGTGCTTCATAAATTACAGTGAAGCTGAACACTACTTGATGTTAGTTATGACTGCGTTTTAATTGTAGCTGCTAAGTCAAAATAGTGTCTCAGGCTAGGCGTCTCAGGCAAGAAACACTGTACTATGAAACCTATATACTTCTCTATGTATACCTAAGTTTTCCTCTTAGTAGCTATTATTACGTTGAGCTGAGAAGATCTTAAATTATAACTGCCCTTAGTAAGGTCTAAAGTAAAGATGGCTTTGAGGTTACTTTAACAGGTGGTTTGTAATTCTGTCTACAGGTTTGCCATCTTTACTCTCACCTTTATATCAGAAGAACTTAAAACAAATGGTACCATGCCTAGATCATATGGCTAAGGGCACGTCAGAGAACAGAGGGACCCTGCCTTCTCTTGGCCAAAACAAATTTCTCAGAGATATATTAAGTTTTTGAGACTCTGAAAGAAGGTGAAGTTCGTTAGCCATCACTTCTATTGTTTTGGACTTGGAGCTTCTGTTTGTTTATTTACTTAATTGGAATAAACGAAATCTGTAGTTAATGAAAGAGGATGAGCTTTACATCATCTTGTTCTGCCTTTACATATACGCAGAGCGTGGCAGCCTTCTCTTTAAACCCACATGAATCATTGCACTCAATTCTACATGTAACCATACTGCTATAACTAAAAGGAACTAATTAAATACACATAGACCAAATAGATTACAAGAAAATAAAGACAACTGAATGTGTTTACTTTCCTTAGGAAAGACACTAATCATAAGCTTTTTCCTGTGGATTACTGCTGTCAGGGACAGATCTGAGAGACTCAGTAGGAAAGACTAGAACATTGCTGATTTTGGAGAGTACACTTGTTCTGACCAGATCTTCTGATCTAATGGTATATATCGTGATTGCAAAGAAAATGTCTCCCACTTGAGTAACGTTTCTAAACTTTTGTCTTGGTCAACCTTCCAGTGCGGTGGTTCTTATCTGTTCGTTACCTTAGGGAGTGTGCTTATTCCTGTTGTAAGAAGATGTTCGTGTTAGAGCAGGCTTTCTCATTTCTCAGCCTTTCTTGTCACTCTCAGCCTTGCATTAACAATAAGGAAGCAAATAGCTCTGAAATCAGGATAACTCAAGGAAGTTGTATTTACAAAGATAATATTACCAGGGTATTGGTCTTCTATATGCAGACCATGGAGTGATGGAGTTAGTGGGAGAAGCAGCATCAGGAGAAGGGAAGTGCCAAAGCCAGAAATAGATCTGTAGAGAGCAGCCCTCCAGGAAGAACCAACCTGTTAAGGAGCAACCAATCCAGGGTGACCTAGAAGCAGGGGCCAGGATATTGACTGTCCTGTTCTCTCTCACCTGTGTTCCTCTGATACTCCTGGCTCTCCATTTGCAGTACCCAGCCAGAGGAGCAAGAAGCAGAGTCCCATAGAGAGGAGGCCACAAGGGGCCCAGAGAATACAGGTGGTGATGTCTGCTGATGCTGGGGAGTGAGGTGGAAATTTCTGGTTCCTTTGAACAATTCAGTTATGTCAAGTGATGTTTTTTTGAAGCTGTTTTGTGAGAGGGTATATGATGTTTACTGAAAACAGACACTGGAGAGGGCTCATGATGAGAAAGAATATAAGTAGAACCCCACAAGCCACTAAGAGAACACCCTTGCATTGCAATGCCATGGAGTACTTTGCTGGTCTTTGCTGGCCTTTGCTAGTCTTCACTGGTCTTCACTTTGTAGAGAGAAATGTACCAAAGAACTTCCTCATGGTATTCCAGCTGATTCTGGCCATGTCTGCTAACTGGTACCTATTTGGCCAAGCCTTGCTGTTTCTGCTGGATTGTGCCACTGCTGCTGATTTGCATTTGGTGTTTGTTATTTAACTGGACTGTTGGTATCCTGACAATGAAGATTGGAATCACCCCAAGGAACTACTTCTAAAAAGCTCCACAACTCCCTTTTCCTACTAGCCTTTTCCCCCTACCTCTGGCCAGAGAGTTAGAAGGGACGTTGAGGTGTTTAAGAACCCTAAAGAAAGTAGGTTTTGAAAAAACCCTAAGCCTGCAGGAACCAGTGGATATACTGCCTTTTCAAGAGGCCTTGTGCCTGCCCTCTGTGCAAAGAGAGCAGTCCTTCTCTCAGGATTTGGCCATATATACTTAGCCTTCATGTTACCACAGTGTTGAAAAGCCCACATTTAGTCTTCTCTAGCTTCTCCGTGCTTATGTTTATCCACCTGCGAGTAACGATGCCAGTGTAAAAGCTCCTGGCCTACCTACTTGCTTTGTGCTTTGCACATGGTGATGTTGTGAGTGGGTGTATTTTGTTTGTTTGTTTTTATAATGAAAAGCTTTAGTCATCTGTACAAGTAGGAAGAGGAATATAATGAACAGGTCATCACGCTACCATTATTGACAGAATCAGTTCTCACTCTGTCACCTTCTTCCCCCATCCTCATTTCTTTTTTTTTTTTCCCATCCTCATTTCTTTTTTTTTTTTTTTTTCCCCACCCTCATTTCTTTAAGCTGTGTTTGCATCAGTCTCCTTAGTGCAAGGGATGGTATTCAGATTATCATGATCTGTGGTATGATTTGAGTCACTAGTACTGTATGCTGACTTTTTTATCTCTAGTTCAAATGAATTTTAGCCCATTTGACATATATAAAGTATAAATAAATATCTACATATTTACACGTACAATGTGTATAGTACACATAGGCTGCATGAATAGCATAAGGGGAAAAAATTGGAATTAAAGAGTTGGTTTTAGTGACCTCTCCTGTGTACTTTACTATGGCTGTTTGTGACCTTTTATTTAACAGACTTTGCTTTTAATGAGTTCTTGCTTGCTTGTTTGTTTTGCCTGAAGACCTAAACTGGTTTTTTTCAGGTGTTTTTTGATGCGTTTTATGTTGTCATATCGGTTTGATAGCTGCCTTACTGTACTTATCCCCAAATGTATGCAGCCTCTAAAATGAGATACTTACATAAACGTGCTGGGGAAATTGGAGCATCTGCTGCAAGTTGCCATTAGCTCTTAATGCCTGAGCACACGCAGCTTTGAAAGTGAGTGTTGTGTCAAATTCTTTTGTATTAGCTGTTTTCATGAGCTAAGATGAACTTCTCCTCTTGACTTCACTTTCTTTTTAAGAAACACACTGAACTGTCCAGGGGGAGCAATTTGCACTGTTCTGTCTTCCTCCTATTGGATCATTAAGTAGAAGAGAGGAATCAGGAGTCACCTTTGTAACACTAGGTGTGAAGTCTGTTGAACAAACATTTGAATGTTCTCAAGGTTATCAGCTAGCCTGTGTGGCTCTTACACCCACAGGAAGGGAGACCTCGTATTTACAGTAGTATAGATTGTATCTGGCCAAGAAACTGAAAATGTGTGTGAATTTTGTTACTGTTATTATATAACTAATATGTCCTTAACAGTGGAATTGAATGGCAACAAAAATCCTTCAGTTAGGACCCCACAGGGAAACCACTGGATTCTTGTTTTGTTTGAAGTGTACATCTACTTGTATGAGTCTTCCTCTCTTCCTTTCCACTTATTTTTTAAGATGAGGTCTTGCTGAGCTTGGAGCTCACTATTTCTGCTAAAGTAGCTCACCAGCCAATCCACAGGATCTACCTGGCTCCCTAACACCATCCCCAGGGCTGGGATTACAGGTGTGTGCTATCGTGCCCAGTGCAGCTTTTACATGAGTTCTGGGAATCCAAACTCAAGCCCTCATACGCGAAACAAGCGTTTTATCCATGGAGCCATCTCCCTAGCCCCTAAAACTGGAGTCTTAAGGCAGTGAGATGTTATTTTGAGAAGCCACAAAAAGGTTTTTTTCGTTTGTTGTTTTCCCCTGAAGAACCACATTGTCCTTTATCAGTCTCTTCAGTAACAGCTCAACATTGTGTCTAAATCTAAAAAGACTTGTTCTATCTGAAGGACAAAAAGACACAAATGTTCTTAGAGGGATTTTTAGAGCTGAGATGGCTATGTTATTACGGTTCTGGAATATTCCCCTTCACGAGGTGGTTGTTACAAGCTACCCCTAGGAGAAAAAAAGCTGTTAGCTAAGAAGAAAATGTGCATTTTATCTGACAAGGACCTAGATAAAGACAACTCATGATGGAAAGAGTGGTACATGGAACAAAAACGGCAACAGTGTAGCCAGAAACTGAAAGTGGCTAACCCGATGCAGGTAAGGCGTTCCCTAGGCGCCTACCTGATGCAGTGGTGCGCTCCTGTGTGGGAACTAAAGCCCTCATGCAGGATTCAGCCATGTGGAGAGAAGACTGCAAAGCCAGTTCCTGGAGTTTAAGAATGATGCCTAGTTTTTGGTCTGTAGCTTGTGGTGCTGAAAGTCTTGTTGGCATTTATTGAATGTTGTGAGTAAGGTTCCAGAATGTACCTAAAATGTGGAAAAACAAAACTTGTTGCTGGAAAAGAGCCTAAACTTAAAAATTCGGTCCAAGTCAACAAAATAATCTCACTTTAAGTCGAAGGAAATATCTGAAGAAAAAGGGCTGCCAGGAAGTGTATAAAGGAGATTCAAAGGCCTACAGAGGGAGAAGGATATTGCTCTTAAACACTTGTGCACCTTGACAGCCTACGATAAACCTTCCCGACCTCTGTCTGGCACTGACCCATTACGGGAATGGCAGCATTTTCTTCTCTAACCCCATTCCCTGCTCAGGAGAGAAACGTGTTTAGGAATGAGGAACATGTGACCACTGATGGGACCTCTCGAAAGCCACAGCATAGTTTGTGGTTTATCTGGTGGACCATAAACCAAAGGAAAAGAAAGGAGGAAGTAGACCACTGCTCCTATTTAGTTTCATTTGCAGAGTACTTCCCAAAATTCAGTGTTCTTTATACTAGGATGTGAATATATTTTCAGAATTTCAAATTTTTGAGCAGAGAAGTGTGATTTTTCGTTATCTACAGTTAAAATTTGGCATAAGAAATGGTTTATCTAGAGTTGTATGAAATCATGTTGGCTTCACAGACTGATGCTTTCCAGTAGCTTTAGGTGACTCCACAGGCCCTGAGGATAGCAGTTTCTTTAAACAAAGAATCATGTCTCTTTAGTTCTAGAATCTCAAGGGACTCTTTAAACAAAAATTCTAGAATCTGAAGGGTTTCTTTAAACAAGGATTCTAGAATCTCAGTGGTTTCTTTAAACAAAGAATATCATGTCTGTTTAGTTCTAGAATCACAAGGGATTCAAGGGACTTTAGTTCTAGAGTCTCAAGAAGGCAGGTGGGGATGCAGGATAAGGTGTTAACGTCATACCCAAGGAACAAGGTCCCCTTCATCTGTTTCTGGGAGATTGCATTTCAAAATGGAATTCTGAGCTGTTTAAGTCTGTATTGGGGACAGTCAGGTGCATTGATAAAGACCTTCCTGCTTAGAAGATATTTAAACAATTCAGTCAGACACCAGAGTTGACATTGGTTTTCCTTATTACTTTCCTGTGTTTATCCCATAAACCATGGTCTCTGCTGTGCATTGTTCTAG
Seq C2 exon
ATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACAGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGCTGACCAACAAAGAAAACCTAAAGCAGATCCATTGGTCCATGTCATCCAGAAGTTAAGCAAGATAGTGGGGCACGAAAAGTCACAAAAATGTCTTCTGATTGGGAAAAAGCGCCAACGCCCAAGTGAGATACCACACTCTCTTGAGAGGGTAGAGAACTGTGAGATCCCAGCTAAAGCAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAAGCCGAGATGTCACAGGCCTGTCCCACCCTTGCCGCCAATGACGGGAAGACTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCGCCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCACGGGCAGCAGCACGACGTGATGCTCATGTGCTCAGAGTGCCACGCCACCTCCAGAAGCCAGCAAGAGCTGGAAGCGCATGTGGTGAGTGAGCATGAGAACAGTGCCAGCAGCCATGCCCGCCAAGGAGCCACAGAAAGAAAGAGTGAGACCTTGGTGGACATTCCAGTGAACGTGGGCAGCCCACAGACCCATGCTGTCCAGAGTGCAGCTGTGGCAGAGACGGGGCGGAGGAAGTGGTATGCATATGAACAGTACGGCATGTACCGGTGCTTGTTCTGCAGCTATACCTGTGGCCAGCAGCGGATGTTAAAGACACATGCTTGGAAACATGCAGGGGAAGTTAACTGTTCCTATCCAATCTTTGAGAATGAAAATGAGCCCCTTGGTCTTCTGGCTTCTTCTGTGTCTGCTGCACCTGGTGGGGTTGATGCAGTCGTCATTGCTATTGGGGACAGCGAACTCAGCATCCACAATGGGCCATCTGTACAAGTACAGATTTGCAGCTCCGAACCACCATCGTCTTCATCTCCTTTAGAACAGAGCACAGAGGAGGGAGTACACCTACGCCAGGCAGTCACCCTGGACTCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCTGAGGAGAATCTGTTTGCTGATAGTTTGCTCTCTTCGGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGAACGTCATTGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCGCCAAAACATTTCCTCATGAATGCTGAAATGGAAGAGGGGAAGAGCCCGAGCCCCGCCGAAGCTCAGACTGGGTGTGGAGGAGCAGGAACTATGTACCATGCTGATAAGTGTACTGTTGATATCGGGGGGTTGATCATCGGCTGGAGCAGTGCAGAGAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGAAGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCAATAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCCAGACACTGGACAAAGGCAGGTCAGTGGTCCATTGGCAACATACTCAAAAAAAATCATGTCTCCTCTTAAGAACTCTTCAGATGGAGGAACAAGTTTTAACCAAAGCAATTCCACTGTGGTAGCTCTCCCAGAGGGAAGGCAGGAATTGTCAGATGGGCAAGTTAAGACAGGCATCAGTATGTCCCTTCTTACTGTAATAGAAAAACTGAGAGAAAGGACAGACCAGAATGCATCAGATGATGACATTTTGAAAGAGTTGCAGGACAATGCCCAGTGTCAGCCCAACAGCGATGGGAGTTTGTTGGGGTCCAACGTGGTGGAATACATCCCAGATGCCGAGCGGCCCTACCGATGCCGCCTGTGCAACTACTCGAGTGGCAACAGGGGCTACATCAAGCAGCACCTGCGTGTCCATCGGCAGAGGCAGCCTTACCAGTGTCCTATCTGTGAGCACATAGCTGAGAACAGCAAAGACTTGGAAAGCCACATGATCAACCACTGTAAAACCAGAATACACCAATGTAAGCAGTGCAAAGAATCTTTCCATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565:ENSRNOT00000018153:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.451
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]