DreINT0181441 @ danRer10
Intron Retention
Gene
ENSDARG00000052164 | znf507
Description
zinc finger protein 507 [Source:ZFIN;Acc:ZDB-GENE-040426-1233]
Coordinates
chr7:46970267-46975208:+
Coord C1 exon
chr7:46970267-46970658
Coord A exon
chr7:46970659-46973055
Coord C2 exon
chr7:46973056-46975208
Length
2397 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTGTGTTGTTGCCGTTTTAGGAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
CCCGGATACAACCCATATAAGGGGCCCACATATGTCGTTATATGCTGGGTCGTAGAGTTCAAATAAGAATAAAAATTTTAAAATAGCACCTGGCTATATTTAATTTAAAATAATAACTCAAAAATGAGGTAATAGGAACTTCTTTACATCTTCTTATATCGATGATGTAATAAGTACAATGCAAAAGAAACATCTTAACGTCATCTTCAAGCGTAGGCTGGTGTTCTGTGGCTGATGTCGCTTTCCATGGTCACATGACCTGCAGCCAGTCACGTGATCGATGCTCCATTCTCGCCATTTTGAGTCCAGAGTGAAGCACTTTTTTCACCCCAGGAATAAAAGCAGCGCATCACGAGCAGCGAGGCCAAAGATCAGACACAACTGCTGCATCA
Seq A exon
GTAAGTAGCGCTCGGGAGCTTGAACACTTGCATGACTCTGGGCTGTTTATTAAACGGCGCAGTTGCTTTTTACAGCTCATGTTGAGGAGTAAAGTGTGCATGTGTGTGCTGCTGTTGTCAGAAACGTCCTGCCCCTTTCTCACGTTGCATCTCCACGGTTATCACGGACACCATGTTGTCAAACACACACACACATACTGCTAACTTAATCTCAACTAGATCACACAGATTGAATGAGATTGTTTGCACGTGTTGAGTTTCTGCCAGTGGGTCTGTGTTTTTAAACATCCGTCAACTCGTCATAAATTGAATTACTGTCGAACAGAAACACACAGCATGTTTGTGTGCAACCCCTTCACTATTGCATATCTTTACTTATAGGCTACAAACGAATAACTTTTAACAATCTAAACATTGTACATATAAATTAAAAACAACTGAGCCCCAATTGATTTTAAAAGGACACTTAAAATAAATATAATTCAGCAATTTTGTCTTGCCCTCATGTTGTTCCAAACCTGTACCACCTATGTGCAGGTTATCCATACTGTACACATGACCCGGTTGTAAAAAAAGCACACAATACATAAATAAACAAATTAAAAACATGTCCAAAATCAGTGCTTTCGAAATATGGTAAACTAAACTGATTTGTTTGTTACCAGTACGATATAATTGTCAGCTGTTTAATAATTCCATGTGTTCATACTCCACGTGTCTTTGTTTTGATACAGTGTATTTCTCTATAACTTCCCTATAACTGTAAGGGGGAAAATGCAGAAGTGTAATGAGGAAATGTTCTACAAGTGGACATAAAAGTGAAAAATCTATTCTTAGATTAGTAAGAAGTTATTCATAAATTACATATGTAATGTGAGTGTATGTGGGTCCCATGTGTGTGTAACAATATGTGCCCATTTATATACATATGGGACTTGCATTGAACCCATGTGAGTAAAACAATTTTATATTAAAATACATTGAAAAAGTTTCGGGCGTAATTAGTTACAAATTGAACAGTGACTAACTAAATTACTTTAAAAAAAAAGGTATTGCCATTAATTTAATTAATTTCAAGTTTTTAAAATTAGGCTAGAGTAAATAAACTTGCCTAAAATACTGTGCATAAATTCAACATTTCCGTATAAATGAAGGTGTCACGGTGGCGCAGTGGGTAGCATGATCGCCTCACAGCAATAAGGTTGCTGGTTCGAGTCTCAGCTGGGTCAATTTGCATTTCTGTGTGGAGTTTGCATGTTCTCCCCATGTTGGCGTGGGTTTCCTCTGGGTGCTCCGGCTTCCCCCACAGTCCAAAGACGTGCTGTAGTTGAATTGGGTAAGCTAAATTGGCCACAGTGTATGTGTGTGAATGCAAGTGTGCATGGGTGTTTCCCGTTGTTGGGTTCCCGCTGTGTAAAACATATGCTGGATAGGTTTTGCTGTGGCAAGAACTGACTAATAAAGAGACTAAGGCAAAAAGAAAATGAATGATTCTTGATATTATTCAAAAATGATCCCTGGTGGGGGATTATGGTCTGATAATTTTGTGATTATTGACACATTTACTGTGCAATGTCCAGCATTTTACAGACTATACTTAACAAAGTTAATGGAAAAAATGCATGTGCATGAAATCAGATGCTTTTAGATTAATCACAGCTGAAAACACCAGACTTTTGTTGGATTCAGTGACAACCACACATTCTTTCATTATTAACAAGTGTAGATATGATGTAAGATATGCATATCACAGCTTCAGTGATAATAACAGGGTACTTGTGAAAGTGCAAAATTTGCACTTTCATACATGTTTTGCTTTGACAATAAATGATTTGAGAGTGTGAGATGCTCTGAAAAGTATTTGTGAGTGTCAATGAAAATCCAATGAATATCAAAGGCTAGCATGGTTTCTTTTGTCCTAGCCTATCCAGTAGATAAGTTACGGAAATAAAACTGAAATAGATGTAACTTTAGATGGCACAATGTGTTTTTGTCATGCCACTTGTATCTTTGAACCTCAATAGACTTTTTTACATCTACATTACACACTGCATGAAAGATGATATTCAAAAAATCATAACACAAGCACTTTAAAACCATCTCTTAAAAACCAAAGTGATTTCTGCTTTTGTTTTAGAAACCACTTAATCTGTCATTGGAAAAAAAGGAAACAGCTGATGTACGAGACAGTAACTAGTGTGTGATATTTATAGATTTGTGAAGTAATGGCTATTCTTGTCAATATGTAAAGATGCCTCTGCTAGTTGACACACACTAAGCTTCAAAAGATTGTCAAAGCATTCCCCAACCAAATAGTTCTGCACTATATGTTTGCTGGCAGTAGAGATACTTGCTCAGTTGTGTTGGTTCTTATACCTTGTGTTGTTGCCGTTTTAG
Seq C2 exon
GAATGGAAGACAGCAGTGGTGTTGCTGTTCTTGTGCCTCACTCTAGAGGCCAGCAGGACACAGTCTTCATTCCCGACAGATGTCTTCTTGGTGTCGAGGACCAGCAACGCCAGCAGCAGAAGCAGGCCGCTGACTCTCTTATTCAGGTCATTGAGAAGCTTAGCAAAATTGTGGAGAAGCGACCCAGACGATGCACCATCTCTGGGAAAAAGAGACCCCCAATTACTTGTGCTTCTGTAAGTGTTCCAGACATCAGGGATGACACTAAAGGGACCACACCTTCTAAGAAACCCAGAGAGCAAAGGGATGACCGCCTGGCATCCAGCAGCACAACTGGGCACTTGATCAAACAGGGGCCTTCAAGTCCAGGTGCCCGGACTGTTACGTGCTACCAGTGCAGTATGTGTCGATTTATATCTCCTACGTTGGAGCAGTTGAAAGAGCATCTGCTCTGTCATGACGAGCAGCACAGCGACCTCATCCTCATGTGTTCAGAATGCCAGTTCACTTCAAACCACCAAGAAGAAGTGGTAGCACATGTAAGACTCCATCTGGAGGAGGGCGACCATGCAAGATGCATCCTAGATGAGCAAGGAACAGAATTGGCAAGAAGCGTGCACCAGAAGACAGCGGTTTTGAGGGCAATCAGCTTGGAATCTGAGAAGACGTCCACACCGAAGAAGTGGTACAGCTTTGAGCAGGGTCGGTACCGTTGTCTCATCTGCAACTATGAATGCAGACAGCAGCGTAATCTGAAGACCCACGCATGGAAACATGCTGGCCTTGTTGACTGCTCGTACCCCATATTTGAAGATGAGACCGAATGTCCTGAGACTTTACAGAGCGCAAGTCCTCCTTTAATTCCACCCTGTAAAGAGGACACCATTGTTGTACTTGCAGCAGTTGGAGGAAAATCCCAGACCCTGCACAGCTCCTCAAGCCTGCAGCTAGAGCTTTGCGCTTCCCCAGAAATGAAGCATCATGAGGAGACACAAGCTTTGAAAACAGTGGAGACCAAAATCCCAGTAATCAATCACCTTTTTTCTTTTAAAGACTCTGAGGAGCGCTTGATGGAGGTCCAGGTAACACCAGAGGCGCAAATGGAGCTGGAGTTGGAGACTGATAGCCAACACGCAGTCTCTGACAGTCTTCTTTCTTCAGCGCAGAAGATTATCAACTGCAGCGGCAACAGCGCCGGCCATGTTAACGTCATTGTGGAGCGACTTCCCTCTGCTGAAGAACCAGTGTCAAGCAAATCTCTGCTCCTCAGCCCAGAAGTAGGAGGAGACAAGACTCTTCTTGACTCTGAGGAGCAAGAGTTAGAGAGCCAACACCACCCTGTGTACTATAAACAAAAGGAGGATGTTGTGATCTCCTGGAATGGAGAGGATGGACAACAGGGTGAGGAGACAATATCTTCTGGATCTCCCTCAGATGAAAATGTGCCACCAGTTCGCAGGAGGACTTACTCAGAGTCTCTTCGGCTGCATTCTTTGGCAGCAGAGGTCTTGGTGGCCATGCCCATGAGGGCCCCGGAGCTTAGCAAGACCACTGCAAAAGGTATACATGACCTGAGTACTCAAAGCCCTGATACAGGTCAGAGAATGGTGGAGACTGACACTGCCAACCCTAAATCATCCTCAGGAGAGCTCAATGGTGGAGAATCAACTGCTCTTATTAACCTTGGCCTCCAGGGTTCAAAAGATTCTCGAGAAGTGCTAGTCGAGGGACCTTCCAAGGCAGGCATCAGCATGTCTCTTTTAACAGTCATCGAGCGACTGCAGGAGCGTTCTGACCAAAACACTTCAGACGAGGACATTCTAAAGGAATTGCAGGACAATGCCCAGAGCCAACACGCTGGTGGAGTTCCTGGAGGTGTTGCTGTGTCTGGTGATGTTTCTACTGCAGACAGTCTGGTTGAATACATCGCTGGGAGCGAGAGGCCCTACCGCTGTAGATTGTGCCTCTACAGCAGCGGAAATAAGGGCTACATCAAGCAGCACCTACGTGTACATAGACAGAGACAGCCCTACCAGTGCCCCATCTGTGAGCATATAGCCTGTGACAGCAAGGACCTGGAACGTCACATGATCCACCACTTCAAGCCCCGCTTGTATAGCTGCAAACAGTGCACAGAGAGGTTCCATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052164:ENSDART00000162237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.401
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.3),PF092376=GAGA=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]