HsaINT0187442 @ hg19
Intron Retention
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:23783]
Coordinates
chr19:32836514-32845863:+
Coord C1 exon
chr19:32836514-32836689
Coord A exon
chr19:32836690-32843734
Coord C2 exon
chr19:32843735-32845863
Length
7045 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTTTACATTATCCTTTTTAGATA
3' ss Score
9.51
Exon sequences
Seq C1 exon
TCACGTGATCCGTCCCCAGCGCCGCCATTTTGGAGCTCCGGATGAGGAGGGGGAAACCGGGGGAAAAGAGGGAAAAGAGCCGGGAGAGAGGTGGGCAAGGACGAGGGCGAGGGCACGGCCGGGTCCTGGCTGGCCAAACGAGGCTCGCGGAAGCAGCAGCCGCCGCCTGACCGCAG
Seq A exon
GTACCGCGCCCCGGGGCCGCCCCTCCGCCCGCTGTTAGCGCCGCCGCCGGCCATGTGCATCCTCCCCTCAGGCCTCTGCCGGCGCTCGCTTCCTCCTCAGCCGGCCGACCCCCGCCCGGTGCTAGCCACAAGCCCCAAGTTCCGTGTCCCGGTTCTGTCTTCTGTGCAGCAAGGCCTGCGGAGACTCTGGGCTTGCCCTGCAGCTGGGGGTGGGGGGAACTTGCTGCTCCCTGCATACTGTCACCAGCCCGGCCCGCCCGCAGGCGTTGCTTCCTTCTCCAGGCGTTGCTTCTTTCTGCAAATGTGAGATCGCTTAGGCCAGCCGGGATGGACCCAGCCACGATGTTCTCACAGCATCTTTTGATTAATTTTCTAAGCTCCCTCATTCCCGACCCATCACCTCAGTCCTTTAGCCAGTGCGTGGTGTAGAAAAAGCTACTACAGAAACGCAGCCCTGGTCTTCTGCATTTATTACCATCCTCTGGAGATAGAATGATGTCTCCAGAGATCACGGAGACCATCAGGGAAAGTTCCCACCTCTTAAGACCTGGGGGCATCGGAATGAATGGTTTGTGTAGAAGGCCGGGATGATTAATAAGGTGGCGGCCACTTTCCCAACCCCAAGGCGGTATTTTTAAGTTTCTGCAGTGGGCTGTAATTTGCTATCAGTCTGCATCGCTCTTCTCAGGCAATTACTGGATTTATCACCTCTTTGAGTTTGCACTTTCTCCAGTACTCCCCTCTCACTCAGAGTATGGGTTGCATTATTGATTAAAAGAAAGCCTGGCCCTTCATTCCTTTACCTCACTAACTCGTTGAAAATTAACTTCAGGGGAGCCCTAAAGATGTTTTTTCTGCCCTGGCAGTGAGCTATTTTACTTAACCGTAATCGATAAGGTAGTTGCATTCTAGGTGAAACGAATAAGCATTTTTTTATCTTTTAGATTTATTCCAGCCAGTATAAGAAACAGTGGCAAAGAAATGTAGGACCAGAGTAGGAAACTGCGTTAGAAGATATATAGGTCACACCACTGTGTCATATCTTTTTATGCTGTTTTTCTGCCTATTGTGCTTGGTTGCAGAATCACTCGTTAGATTGTATTTTTAGTTTAGATTAAAATAGCAATGTGCAATTTATTGTTCCATTCTCATTAGAAAATGTTGTCAGTAAAACCAATAGTGTTGAGTCCAGTACCTAAATTCTGAGGTAAAACAAAATACACAATTATTGGGAGAAGTTTCCAGAGCTATTTTTTCCTAACTTCTGCAAAATCCTCAAGTCGGCTTGTTAGATAAATTATTTAAATTTGCATTACGTAATAGGGTTGCATGAACATTCCTCTGAATTTCTTTTTACATGGAATATTGAGAAATTTTTCACTGCCAAAAAAAAAATCATTACTTTGTTTCACCAAGAAAGAGAAATGTTTTGATACTATATACTTTCGTTCTTGGCCACAGCTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGGGTAAGTCACTTAAACCACACTGAGTGTTTCCTTATTTATAAGACTGTATAACACCCACCTAGCCTGTCCTAAAGAGTTATGAGGATCAGATACCACTAACATGTTTGATAGAGCCTAGCTGTAAGGAGCTGTTACTCTTTTCAGTATTGATATTTTGTACATTTTTATTCTCATTGAGAATTAAGATGAAAATTGGTGTATTAGAGAAAGCATGGTTTTAGAGTGAGATTGGCCTGGATTCCTGTTCTTAAACCAGTTACCACTTTGTGTCTGTGAGTCTCAGGTTTCTCATCTGCAAAAAAAAAAAAAATACACAAAATTTGAATATTACACAAAATCTACAGAGGCATTACTCCCTAGACTTGCACCTCATGGGCAAGGATTTCCTCAGTCATTTTTGTAGTCCCCAGCATTCTGGTTGGCACATTATAGGTGCTCAATAAATGACAGTAAATCTGAATATTGGTTAATGTTAGTTAGACCTTATGTCTTCATTGCAGCTGCCAAATTAGAATATTCTCTCAGGCTATGTGCCAACTAAGAAACTCTAGACTATGAAACTCCATATACTTGTGATATTTATACTCATTTTTTTCTTAGTGGTAATTAATAATTACCTTGGGCTCAGAAGATTTTAAATCAAATAAATTGTAGCCAATATAGTGAGGTAAATCTATAAATAATGTGTAAGCAGTTTCCAGGTAACTTTATAGACAGTTTATAATTCAGGGACCTGAAAGTTCATCTAGCTTCACCCTCTTGTTTTACATCTGAGCAATCTAAAACTCACAGAGACAGTGACTTGCCTAAGGTCACACAGCTAATTGAGGGCACTTTAGGGGAGGGACCCTTGAGCTTATGTCCCCTGCCTTCTTTTGGCTGGAGCAAAATAAATTTGTCATATTTTAGAATTACAATAATCTGGAAGAATGGGGAATTTATTGGCCATTACTTTTATAGCACAATTTTTTTTTTTTTCCCATTTTGGAAAAAACAAATTCTTGTTCTGAAAGAGAAGGTTCTTTTGTATCATATTGTACTTTTCTTCATATAAACACAGAAAATTACAGCCTTTTCTCCAGGCCCACATGAATTGTTCAACTTGATTTTACTCATGATGACCATACTACTGTAATTATAAAGAACTAATTAGATACCCAAATAACCAAATAGCAAATTATAAGGAAATAAAGACAACTGAAATAATTTGGCTCCTAACTTTTTGTGAGAAAGATATTAATTAGAAGCATTTGCCTGTGGAATACTGTTGTCAAGGAAAGATTTGAGAGAGTTGGTGGAAAGGGTTATAGAACTTTTCTGGTTTGGGATACAACTTTTGTTTATTACTTATTTATTGGTAACAATTTAATATATTTAATGTTGTTATGTCTAAACATTACAAACAAGAAATCTCCTGTTTTGCTAATGCCTGTCGTCTTCTTTCCTCCTGGTGAACTTTCCTATTCAGCCATATCGATCTTTTCACTCACCCCCAGATAGCATGCTTATTCTTACTTCTAAAAATATAGTCATGTCATGGCTGCTTTTCTGGTCACTGCTACCCTTGTGTCAACTTGTATCAGCAGTATTCCAAGGAAGCAAATGGCACGTTGAAATGAGGATAATTCAAGGAAGGTATATTTACAAAGATATTAGTAATAAAGGTGTTGGACTTCAATAAGCAAACCACAGCATAATGCAGTTATCTGGAGCTAGCAGCATTAGGAGAGGGAGAGGCATCAGAATCAGAAGAAGGGTCTTGGAGAGCAGCCTACCTGGAAAGAAATAGCCTTCTATTGAGGAACACAGCCAATCCAAGGTGACCTAGAGGTAGAGAACCAGGACGATGAATATTCTGATCTCACTCTGCTACCTCCCTCTGATCTGTCATGGTTCTTCATTGGCTGACCTCAACCAGAAGGCAGAGGACAGGGGAGCCTAGTGATGTAATCCCTCTGACAGAGAGCAGAATGGAAAGGAGGATACAGTGAGCCTAGAGGGCAAATGGATGATGTCTGGCATGCTGCCCATCCTTTGGGAACCAGTGGACATCTTACCTCTCCATGAAGCTTTTGCTTACCTTGCTAGCCCAAAAGAGCTCTTCAGTATCTTTCAGGATTTAGTCATTGACTGTTGCCTTTTATTTTACCTTGTGTACCATTGCGTTGTTTAAATGCTGTTACTTTTTAACTTCCAAATGTTTGCCTTATCCACTCAACTCAGTTTTAAACTGCAAGTATTAAGAATTTAAAATTTTTCCTGATACTTTGCCTTGCGCCTTGCACATAACAATTTGTTTGTTACACACACACACATATTTGTATTTCTGCATTAGTGGTCTAAATAAAATTTCTGTGATTTTAAGGAATCAAGAAAGTTGAAGGATTGGCCTTAAGGTAACTTCCCCTCTGTGTATACTTTATTATGATCTGTTTAGCCTTTTTATTATGAAAAATGTTAAACATTTACATAAGTAGAAAGAACAGTGAATTCCTAGGTACTCATCATGCAACTTCAATTACAGAATTAGTCATTCTTTCTTTATTCTCATCCTATCCACCCCACCACTGCAGTATCACCAAGGTAATTGTTTTAAAGCTGTGCTTACACTGATCTCTTGGAGGCCAAGGAGAGTATGCAGATTGTCATAGTTTATGTTGTCATCACTATTGAGCCACTGACATTGTATGTATACTCCTTATTTCATCTCTTTTGTTCAGATTTGCTTCACTTGACACACAATCTCATATATATGTATTTCTGCATTAGTGGTCTAAGTAACATTTTTGTGAAAATTGAAAGAGTTGGCCTTACAGTAACTTCCCCTCTGTGTATACTTTATTATCAGCTGTTTATCTAACCTTTTTTTTTTTTTTTTAACAGAGACTTGTTTTTATGAGATTAACCTGTGCATTGATTTTGCATGGGGACCCAAACTGGTTTTTCAGGTGTTTCCTGACGTATTTCATGTTGTCATATCTGTTTTATAGCTGCCATTACTGTACTTATCCCCAAATGTATGCAGCCTTTAAAATGAGATACTTACATAAATGTTCAGGGAAAATTGGAGCATCTGCTGCAAATTTCCATTAGCTCTTAATGCCTGAGCCGACACAGCTTTAAAAATCTGAATGTTTTGTCAGATTCTTTTGTATTAGTCTTTTTCTTGAGTTAAGATGAACTCCTCCTTCTCTTCATTTCACTTTCTTTTTAAGGTACACACTGAAATATCCACAGGGAGCAATTTGCACTGGTCTGTGTCACTTCTCTTATTAAGTAGAAGAAAGATAACATGAGTCACCTTTGTAACCCTACGGGTGTGCAAAGTCTCTTGAGCAAACATTCACTTGTTAACCTCCAGATGATCAGTCAGCCTACATGGGTGTTACATTTCATGGGGAAGGAGACCTTAGATCTACAGCAGAGAGCCGTATCGTGTTCAGGAGGATTCCTATTATTAAACTTATTATTTAATCAATTTGCATTTAACCATTGAACTGACAGACATAAGGCCTTAAGTTAATCACCTTAAAGGGAAATCAGTAGTCACATGAAGAGCCACAGCTCCTCTTGGCCTAAAAATGTGGAATTCTAAGACAATAAAGTGACTTAGGAAGTCACAAAAGGGTTTTTCTAAGGAAACAAATTGTTCCCCCATTGGTCTCCTCTTTAATGACTTACAGCTGAGCGTAGAGATCTAAAAAGACTTTTGTTCCTTCTACCTGAGAAAGATGAAACAGAACTAGTCTTTTGAGAGATTGTTTAAGGGAGAGTGGCTGAAGGACCACGGGCCTTTGGGAGCCAGGGTAGCTGTCATTGTTGGAATGGCCATGGAATGCATGTGAGGGCAGTTAGAGACAGCTAGTAGCCAAGAGAAAAAAAGCTGATGCCATAGGGCAGAGTATTATTAGGAAGAAGGGAAGAAATAGTACTGAAGAAGCCAAGAGTAAAGTGTTTGCATTTTTGCCTGATGTGGACCTAGATCTAGAAAGCTGGCTTGCCAGAAGGAGTAGAAAATCAGGAAGAAAAGCCATAGCTGCTGCCCAGAGTTGTGGGCGACCTGGCACTGAAGCTGGTCAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGTGGGGGGGCGGGGCCTGTTTTTGTGTTTGTGTATATGTGTGTGTGTGTGGCGTGGGGGCGGGCGGGGCCTGGCAGGACATTAGGTATCATCTTGGCAGGGGCTGAAGGGCCCTTATATGTTGATTCAACCATGCGGGGAAGAACAGCCATGATTCACCACCTAAAATAAGAATTCAGAGCCTGGGACTGAAGTTTAAGAATAGTGTGGTCTTTGGTCTATAGCTAGTGCCACTAAAAATTTTGTTGGCATTTATTGAATGTTGTGAGTAAGATTCCAGAATGCACCTAAAATGTGGAAAAACAAAACTTGTTGCTGGAAAAAAGCCTAAACTTAAAAATGTGATCCAAGTCAACAAATTAATCTCACTTTAAGCCAAAGGAAATGTTTGAAATGAAAGTACTGCCAGGAAATAGAAAGAGTATTCTAGACTTAGGCAGAAAGATTTATGGGTATTTTATGTTTAGTGACTTCCTCAGCCATAATGCATTATTAGAACGAACAAATAACCTCTTCTAAGGACTCTGTTCATATCTGGAACTGAAACACAACTGGGATATCAATTTTTTCCTTCTCTGATGTCCCTTACCCTTTCAGGGAAAAAAAAAAAAACCATATATGTGGATATGAGTAATAGTTGACCACTAATATGACCTCTAAAAAAAAACCACAGCATAGTTTGTGGTTTATCTTCAGGAAGATAAAGGAAGTAAAAGTAGGAACTAGATTATTGCTTTTATTTAATTTCATTTATATAGTACTTTCCCAAATTCAATATGCCCTGTACAAACTACATGACTATAGTTTCACAATTTCAAAGATTTGGGGAGAAAAAAAACAAATTTGTGATTTTAGTAATAAAACTGCAGCTATATTTGGTATAAGAAATACTCTCAAGAATTGTATCAGTCATTGGCTTTACAGAGTGATGTTTCACAGTAACTGGAGGGGTTTCACATGCCTTGAGAATGGCTGTGCTCCTTTAATCAAGGAATAGGAGTCTTTTTTTTTTTTTCTTGGCATTGTGCAAAAGGGAGGGAGTACTTTTGGTCCTGCTGGATGCTGAAGGCAAAGAAAGTGAAGAAAAATGGAGAAAAAGATCATCATTTCCGAAGAAATAAGTGATAGAGGGGAGTATCTTCATCATTAGTCTTGATAGAAGATTGCATTGTAAAGAGAAATTCTAACCAATTTAAATCTATACTGGGGATCGCCGGGTGTGTGGACATGGAGCTTCCAGCTTAGAAAATACTTAGATGAGATTACAGACACTAACATTCTCTTATATTTTCCAAATTACATGCCTGTAATTATCCTGTAACCTGGTATTTTTCTGTTTTACATTATCCTTTTTAG
Seq C2 exon
ATATGGAAGAAAGTAGCAGTGTTGCCATGTTGGTGCCAGATATTGGGGAACAGGAAGCTATACTGACTGCTGAAAGTATCATCAGTCCTTCATTGGAAATTGATGAACAAAGAAAAACTAAACCAGATCCATTAATCCATGTTATCCAGAAGTTAAGCAAGATAGTGGAAAATGAAAAGTCACAAAAATGTCTTTTAATTGGGAAGAAACGCCCACGTTCAAGTGCTGCAACACACTCTCTTGAAACCCAAGAACTTTGTGAGATTCCGGCTAAAGTAATCCAGTCACCTGCTGCTGATACTAGAAGGGCTGAGATGTCACAAACAAATTTTACCCCTGACACTCTTGCCCAGAATGAAGGGAAGGCTATGTCTTATCAGTGTAGCCTTTGTAAGTTTCTATCATCATCCTTTTCCGTGTTAAAAGATCATATTAAGCAACATGGTCAGCAAAATGAAGTGATACTGATGTGCTCAGAGTGCCATATTACATCTAGAAGCCAGGAGGAACTTGAAGCCCACGTGGTGAATGACCATGACAATGATGCCAATATCCACACCCAATCCAAAGCCCAACAGTGCGTAAGCCCCTCCAGCTCTTTGTGTCGGAAAACCACAGAAAGAAATGAAACCATTCCAGATATCCCAGTAAGTGTGGACAATCTACAGACTCATACTGTCCAAACTGCATCTGTGGCAGAAATGGGTAGGAGGAAATGGTATGCATACGAACAGTACGGCATGTATCGATGCTTGTTTTGTAGTTATACTTGTGGCCAGCAGAGAATGTTGAAAACACACGCTTGGAAACATGCTGGGGAGGTTGATTGCTCCTATCCAATCTTTGAAAATGAAAATGAACCCCTAGGCCTGCTGGATTCTTCAGCAGCTGCTGCGCCTGGTGGGGTCGATGCAGTCGTCATTGCTATTGGAGAGAGTGAACTGAGTATCCACAATGGGCCATCAGTGCAAGTGCAGATTTGCAGCTCAGAACAGTTATCATCTTCATCTCCTTTAGAACAGAGTGCAGAAAGAGGAGTACACCTAAGTCAGTCAGTTACCCTGGACCCCAATGAGGAAGAAATGCTAGAAGTGATTTCTGATGCAGAGGAGAATCTGATTCCTGATAGCCTGCTTACATCAGCACAGAAAATCATCAGCAGCAGCCCCAATAAAAAAGGGCATGTTAACGTGATAGTGGAGCGATTGCCAAGTGCTGAAGAAACCCTTTCACAGAAGCGCTTCCTCATGAACACTGAAATGGAAGAAGGGAAGGACCTGAGCCTGACAGAAGCTCAGATTGGGCGCGAAGGAATGGATGATGTTTATCGTGCTGATAAATGTACTGTTGATATTGGGGGATTGATCATAGGCTGGAGCAGTTCAGAGAAAAAAGACGAGTTAATGAATAAAGGCCTGGCTACTGATGAGAATGCCCCACCAGGCCGGAGAAGGACAAATTCTGAGTCTCTTCGATTACACTCATTAGCTGCAGAAGCCCTTGTCACAATGCCTATAAGAGCTGCAGAGTTGACAAGAGCCAACCTGGGGCACTATGGAGATATAAACCTTTTAGATCCAGATACTAGTCAAAGGCAAGTAGATAGTACATTGGCAGCGTACTCAAAAATGATGTCGCCACTTAAAAACTCTTCAGATGGATTAACTAGTCTTAACCAAAGCAACTCCACCTTGGTAGCACTCCCAGAGGGTAGGCAGGAATTGTCAGATGGGCAGGTTAAGACAGGCATCAGCATGTCCTTACTCACCGTCATTGAAAAATTGAGAGAAAGGACAGACCAAAACGCTTCAGACGATGACATTTTGAAAGAGTTGCAGGACAACGCCCAGTGCCAACCCAACAGCGATACAAGTTTGTCCGGAAACAATGTGGTGGAATACATCCCGAATGCTGAACGACCCTACCGTTGCCGCCTGTGTCACTACACAAGTGGCAACAAGGGCTACATCAAGCAGCACTTACGAGTCCATCGACAGAGACAGCCTTATCAGTGTCCTATCTGCGAGCACATAGCGGACAACAGCAAAGATTTGGAGAGTCACATGATCCACCACTGTAAGACAAGAATATACCAGTGCAAGCAGTGTGAAGAATCCTTCCATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813-ZNF507:NM_014910:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.340
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.2),PF0009621=zf-C2H2=PU(50.0=1.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)